MirGeneDB 2.1

MirGeneDB ID

Tgu-Let-7-P2a1

Family name LET-7 (all species)
Seed GAGGUAG
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-let-7a-3
Paralogues Tgu-Let-7-P1c  Tgu-Let-7-P1d  Tgu-Let-7-P2a2  Tgu-Let-7-P2a3  Tgu-Let-7-P2a4  Tgu-Let-7-P2b1  Tgu-Let-7-P2b2  Tgu-Let-7-P2b4  Tgu-Let-7-P2c1  Tgu-Let-7-P2c2  Tgu-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2a1  Ami-Let-7-P2a1  Bge-Let-7  Bpl-Let-7  Bta-Let-7-P2a1  Cfa-Let-7-P2a1  Cgi-Let-7  Cli-Let-7-P2a1  Cmi-Let-7-P2a1  Cpi-Let-7-P2a1  Cpo-Let-7-P2a1  Cte-Let-7  Dan-Let-7  Dma-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2a1  Dpu-Let-7  Dre-Let-7-P2a1a  Dsi-Let-7  Dya-Let-7  Esc-Let-7  Ete-Let-7-P2a1  Gga-Let-7-P2a1  Gja-Let-7-P2a1  Gmo-Let-7-P2a1a  Hme-Let-7  Hsa-Let-7-P2a1  Isc-Let-7  Lan-Let-7  Lch-Let-7-P2a1  Lgi-Let-7  Loc-Let-7-P2a1  Mal-Let-7-P2a1a  Mdo-Let-7-P2a1  Mml-Let-7-P2a1  Mmu-Let-7-P2a1  Mun-Let-7-P2a1  Npo-Let-7  Oan-Let-7-P2a1  Obi-Let-7  Ocu-Let-7-P2a1  Ovu-Let-7  Pbv-Let-7-P2a1  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2a1  Sha-Let-7-P2a1  Sko-Let-7  Spt-Let-7-P2a1  Spu-Let-7  Sto-Let-7-P2a1  Tca-Let-7  Xbo-Let-7  Xla-Let-7-P2a1c  Xla-Let-7-P2a1d  Xtr-Let-7-P2a1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(TaeGut1_add)
12: 19655935-19656006 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Let-7-P2a1)
Mir-2987 12: 19651218-19651275 [-] UCSC Ensembl
Let-7-P2c1 12: 19654532-19654606 [-] UCSC Ensembl
Let-7-P2b1 12: 19655525-19655601 [-] UCSC Ensembl
Let-7-P2a1 12: 19655935-19656006 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCAGCUCUGAAGAUGCCUGCACUGUGGGAUGAGGUAGUAGGUUGUAUAGUUUUAGGGUCAUACCCACCACUGGGAGAUAACUAUACAAUCUACUGUCUUUCCUAAAGCAGCAGAUAAUCAACAAUGGAAGC
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Structure
        10         20         30        40        50        60      
CCCAGCUCUGAAGAUGC-    A-| G     U   GU                UUAGGGUCAUACC 
                  CUGC  CU UGGGA GAG  AGUAGGUUGUAUAGUU             \
                  GACG  GA AUCCU UUC  UCAUCUAACAUAUCAA             C
CGAAGGUAACAACUAAUA    AC^ A     -   UG                UAGAGGGUCACCA 
130       120       110        100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Let-7-P2a1_5p

mirBase accessionMIMAT0014519
Sequence
0- UGAGGUAGUAGGUUGUAUAGUU -22
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Star sequence

Tgu-Let-7-P2a1_3p*

mirBase accessionNone
Sequence
51- CUAUACAAUCUACUGUCUUUC -72
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