Let-7-P2a1

MirGeneDB ID

Xtr-Let-7-P2a1

Family name

LET-7 (all species)

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-let-7e-1

Paralogues

Xtr-Let-7-P1b Xtr-Let-7-P1c Xtr-Let-7-P2a2 Xtr-Let-7-P2a3 Xtr-Let-7-P2b2 Xtr-Let-7-P2b3 Xtr-Let-7-P2c2 Xtr-Let-7-P2c3 Xtr-Let-7-P2c4

Orthologues

Aae-Let-7 Aca-Let-7-P2a1 Aga-Let-7 Agr-Let-7 Ami-Let-7-P2a1 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P2a1 Cfa-Let-7-P2a1 Cja-Let-7-P2a1 Cli-Let-7-P2a1 Cmi-Let-7-P2a1 Cpi-Let-7-P2a1 Cpo-Let-7-P2a1 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2a1 Dpu-Let-7 Dre-Let-7-P2a1a Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P2a1 Egr-Let-7 Esc-Let-7 Ete-Let-7-P2a1 Gga-Let-7-P2a1 Gja-Let-7-P2a1 Gmo-Let-7-P2a1a Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P2a1 Isc-Let-7 Laf-Let-7-P2a1 Lan-Let-7 Lch-Let-7-P2a1 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P2a1 Mal-Let-7-P2a1a Mdo-Let-7-P2a1 Mgi-Let-7 Mml-Let-7-P2a1 Mmr-Let-7-P2a1 Mmu-Let-7-P2a1 Mom-Let-7 Mun-Let-7-P2a1 Npo-Let-7 Oan-Let-7-P2a1 Obi-Let-7 Ocu-Let-7-P2a1 Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P2a1 Pau-Let-7 Pbv-Let-7-P2a1 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P2a1 Rph-Let-7 Sha-Let-7-P2a1 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2a1 Spu-Let-7 Sro-Let-7 Sto-Let-7-P2a1 Tca-Let-7 Tgu-Let-7-P2a1 Tur-Let-7 War-Let-7 Xbo-Let-7 Xla-Let-7-P2a1c Xla-Let-7-P2a1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

AIUY381245_421853568: 410-481 [+] UCSC Ensembl

Seed

GAGGUAG

Precursor
(pre-Mir +30nt flank)

GCUGCUCUCUGGCGCCACCGCCCUGUGGGAUGAGGUAGUAGGUUGUUUAGUUAUUGGGCCGCACCCACCAAUGGGAGAGAACUACACAACCUACUGUCUCUCCUAAAGUGGCCGGAAUCUCCUCACGACCAC

Get precursor sequence

Structure

        10         20         30        40        50        60      
GCUGCUCUCUGGCGCCACC-   -| G     U   GU          U     AUUGGGCCGCACC 
                    GCC CU UGGGA GAG  AGUAGGUUGU UAGUU             \
                    CGG GA AUCCU CUC  UCAUCCAACA AUCAA             C
CACCAGCACUCCUCUAAGGC   U^ A     -   UG          C     GAGAGGGUAACCA 
130       120       110        100        90        80        70

Deep sequencing

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Comment

Not in assembly but in trace archive.

3' NTU

Yes

Motifs

CNNC at 3p(+17)

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Let-7-P2a1_5p

mirBase accession

MIMAT0003666

Sequence

0- UGAGGUAGUAGGUUGUUUAGUU -22

Get sequence

Proposed targets

TargetScanVert: xtr-let-7e

Star sequence

Xtr-Let-7-P2a1_3p*

mirBase accession

None

Sequence

51- CUACACAACCUACUGUCUCUC -72

Get sequence