Let-7-P2a2

MirGeneDB ID

Xtr-Let-7-P2a2

Family name

LET-7 (all species)

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-let-7e-2

Paralogues

Xtr-Let-7-P1b Xtr-Let-7-P1c Xtr-Let-7-P2a1 Xtr-Let-7-P2a3 Xtr-Let-7-P2b2 Xtr-Let-7-P2b3 Xtr-Let-7-P2c2 Xtr-Let-7-P2c3 Xtr-Let-7-P2c4

Orthologues

Aae-Let-7 Aca-Let-7-P2a2 Aga-Let-7 Agr-Let-7 Ami-Let-7-P2a2 Bge-Let-7 Bko-Let-7 Bpl-Let-7 Bta-Let-7-P2a2 Cfa-Let-7-P2a2 Cja-Let-7-P2a2 Cli-Let-7-P2a2 Cmi-Let-7-P2a2 Cpi-Let-7-P2a2 Cpo-Let-7-P2a2 Cte-Let-7 Dan-Let-7 Dlo-Let-7 Dma-Let-7 Dme-Let-7 Dmo-Let-7 Dno-Let-7-P2a2 Dpu-Let-7 Dre-Let-7-P2a2a Dre-Let-7-P2a2b Dsi-Let-7 Dya-Let-7 Eba-Let-7 Eca-Let-7-P2a2 Egr-Let-7 Esc-Let-7 Ete-Let-7-P2a2 Gga-Let-7-P2a2 Gja-Let-7-P2a2 Gmo-Let-7-P2a2a Gpa-Let-7 Gsa-Let-7 Gsp-Let-7 Hme-Let-7 Hmi-Let-7 Hru-Let-7 Hsa-Let-7-P2a2 Isc-Let-7 Laf-Let-7-P2a2 Lan-Let-7 Lch-Let-7-P2a2 Lgi-Let-7 Lhy-Let-7 Llo-Let-7 Loc-Let-7-P2a2 Mal-Let-7-P2a2a Mal-Let-7-P2a2b Mdo-Let-7-P2a2 Mgi-Let-7 Mml-Let-7-P2a2 Mmr-Let-7-P2a2 Mmu-Let-7-P2a2 Mom-Let-7 Mun-Let-7-P2a2 Neu-Let-7-P2a2 Npo-Let-7 Oan-Let-7-P2a2 Obi-Let-7 Ocu-Let-7-P2a2 Ofu-Let-7 Ovu-Let-7 Pab-Let-7-P2a2 Pau-Let-7 Pbv-Let-7-P2a2 Pca-Let-7 Pcr-Let-7 Pdu-Let-7 Pfl-Let-7 Ple-Let-7 Pmi-Let-7 Pve-Let-7 Rno-Let-7-P2a2 Rph-Let-7 Sha-Let-7-P2a2 Sko-Let-7 Sma-Let-7 Sne-Let-7 Snu-Let-7 Spt-Let-7-P2a2 Spu-Let-7 Sro-Let-7 Sto-Let-7-P2a2 Tca-Let-7 Tgu-Let-7-P2a2 Tni-Let-7-P2a2a Tni-Let-7-P2a2b Tur-Let-7 War-Let-7 Xbo-Let-7 Xla-Let-7-P2a2c Xla-Let-7-P2a2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

ZWK376327_248187494: 423-492 [-] UCSC Ensembl

Seed

GAGGUAG

Precursor
(pre-Mir +30nt flank)

GCCCCCCCAGAUUCCGACUGCCCUUUGGGGUGAGGUAGUAGGUUGUUUAGUUGUGGGUUGCACCCUGACGUUUGGAUAACUAUACAAUCUACUGUCUUUCCUGAAGUGGCUGUAAUGUCAUCGUGGGAGC

Get precursor sequence

Structure

        10         20         30        40        50        60     
GCCCCCCCAGAUUCCGACU-   -|  UG   U   GU          U     GUGGGUUGCACC 
                    GCC CUU  GGG GAG  AGUAGGUUGU UAGUU            \
                    CGG GAA  CCU UUC  UCAUCUAACA AUCAA            C
CGAGGGUGCUACUGUAAUGU   U^  GU   -   UG          U     UAGGUUUGCAGU 
.       120       110       100         90        80        70

Deep sequencing

Go to detailed chart

Comment

Not in assembly but in trace archive.

3' NTU

Yes

Motifs

UGUG in loop

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Let-7-P2a2_5p

mirBase accession

MIMAT0003666

Sequence

0- UGAGGUAGUAGGUUGUUUAGUU -22

Get sequence

Proposed targets

TargetScanVert: xtr-let-7e

Star sequence

Xtr-Let-7-P2a2_3p*

mirBase accession

None

Sequence

49- CUAUACAAUCUACUGUCUUUC -70

Get sequence