MirGeneDB

MirGeneDB ID

Cpo-Let-7-P2a2

Family name LET-7 (all species)
Seed GAGGUAG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-let-7a-3
Paralogues Cpo-Let-7-P1a  Cpo-Let-7-P1b  Cpo-Let-7-P1c  Cpo-Let-7-P2a1  Cpo-Let-7-P2a3  Cpo-Let-7-P2b1  Cpo-Let-7-P2b2  Cpo-Let-7-P2b3  Cpo-Let-7-P2c1  Cpo-Let-7-P2c2  Cpo-Let-7-P2c3 
Orthologues Aae-Let-7  Aca-Let-7-P2a2  Ami-Let-7-P2a2  Bge-Let-7  Bta-Let-7-P2a2  Cfa-Let-7-P2a2  Cgi-Let-7  Cli-Let-7-P2a2  Cpi-Let-7-P2a2  Cte-Let-7  Dan-Let-7  Dme-Let-7  Dmo-Let-7  Dno-Let-7-P2a2  Dpu-Let-7  Dre-Let-7-P2a2  Ete-Let-7-P2a2  Gga-Let-7-P2a2  Hme-Let-7  Hsa-Let-7-P2a2  Isc-Let-7  Lan-Let-7  Lgi-Let-7  Mdo-Let-7-P2a2  Mml-Let-7-P2a2  Mmu-Let-7-P2a2  Oan-Let-7-P2a2  Ocu-Let-7-P2a2  Pfl-Let-7  Pmi-Let-7  Rno-Let-7-P2a2  Sha-Let-7-P2a2  Sko-Let-7  Spu-Let-7  Sto-Let-7-P2a2  Tca-Let-7  Tgu-Let-7-P2a2  Xtr-Let-7-P2a2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(cavPor3)
scaffold_160: 1994495-1994562 [-] UCSC
Clustered MiRNAs
(< 10kb from Let-7-P2a2)
Let-7-P2b2 scaffold_160: 1994146-1994220 [-] UCSC
Let-7-P2a2 scaffold_160: 1994495-1994562 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CCUCGUCGAGAGACUGGCCGUCCUUUGGGGUGAGGUAGUAGGUUGUAUAGUUUGGGGCUCCGCCCUGCUGUGGCUAACUAUACAAUCUACUGUCUUUCCUGAAGUGGCCGUGAUAUCUGCGGUGGAUA
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Structure
        10         20         30        40        50        60    
CCUCGUCGAGAGACUGGCC-   -|  UG   U   GU                UGGGGCUCCGC 
                    GUC CUU  GGG GAG  AGUAGGUUGUAUAGUU           \
                    CGG GAA  CCU UUC  UCAUCUAACAUAUCAA           C
AUAGGUGGCGUCUAUAGUGC   U^  GU   -   UG                UCGGUGUCGUC 
      120       110       100         90        80        70
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
 +
To
Mature sequence

Cpo-Let-7-P2a2_5p

MirBase accessionMIMAT0046817
Sequence
0- UGAGGUAGUAGGUUGUAUAGUU -22
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Star sequence

Cpo-Let-7-P2a2_3p*

MirBase accessionMIMAT0046818
Sequence
47- CUAUACAAUCUACUGUCUUUC -68
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