MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-221-P1c

Family name MIR-221 (all species)
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-222b
Paralogues Cli-Mir-221-P1a  Cli-Mir-221-P2a 
Orthologues Aca-Mir-221-P1c  Ami-Mir-221-P1c  Cmi-Mir-221-P1c  Cpi-Mir-221-P1c  Dre-Mir-221-P1c  Gga-Mir-221-P1c  Gja-Mir-221-P1c  Lch-Mir-221-P1c  Loc-Mir-221-P1c  Mun-Mir-221-P1c  Oan-Mir-221-P1c  Pbv-Mir-221-P1c  Spt-Mir-221-P1c  Sto-Mir-221-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)		 scaffold72: 1257573-1257639 [+]
Seed GCUACAU
Precursor
(pre-Mir +30nt flank)		 
AGACCCCACGGAGACAAUGGUGCUCUUGGCUGCUCAGUAGUCGGUGUAGGAUCUGUCUGACAGUCUCGCUAACAGCUACAUCUGAUUACUGGGUCACCAAAGGGUGACCACACUGCACCCACAGGAG
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Structure
        10        20          30        40         50        60  
AGACCCCACGGAGACAAU   -    -    CU             -|    GAUCUGUCUGAC 
                  GGU GCUC UUGG  GCUCAGUAGUCGG UGUAG            A
                  CCA UGGG AACC  UGGGUCAUUAGUC ACAUC            G
GAGGACACCCACGUCACA   G    A    AC             U^    GACAAUCGCUCU 
     120       110       100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Li Mi Ov Pe Te To
Star sequence

Cli-Mir-221-P1c_5p*
mirBase accessionNone
Sequence 
0- UGCUCAGUAGUCGGUGUAGGAUC -23
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Mature sequence

Cli-Mir-221-P1c_3p
mirBase accessionMIMAT0038608
Sequence 
43- AGCUACAUCUGAUUACUGGGUCAC -67
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