| MirGeneDB ID | Dre-Mir-221-P1c |
|---|
| Family name |
MIR-221 (all species) |
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| Species |
Zebrafish (Danio rerio) |
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| MiRBase ID |
dre-mir-222b
|
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| Paralogues |
Dre-Mir-221-P1a1
Dre-Mir-221-P2a1
Dre-Mir-221-P2a2
|
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| Orthologues |
Aca-Mir-221-P1c
Ami-Mir-221-P1c
Cli-Mir-221-P1c
Cmi-Mir-221-P1c
Cpi-Mir-221-P1c
Gga-Mir-221-P1c
Gja-Mir-221-P1c
Lch-Mir-221-P1c
Loc-Mir-221-P1c
Mun-Mir-221-P1c
Oan-Mir-221-P1c
Pbv-Mir-221-P1c
Spt-Mir-221-P1c
Sto-Mir-221-P1c
|
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(danRer11) |
chr21: 44568190-44568252 [-]
UCSC
Ensembl
|
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| Seed |
GCUACAU |
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Precursor
(pre-Mir +30nt flank) |
GUGUGUGUGCUGACAUGACGUGAUCUGCAGACUCAGUACUCGGUGUAGAGUCUGUGUGAUUCAGAAGAGCAGCUACAUCUGAAUACUGGGUCAGUGGAGACGUCACACGCUACCCGCACACAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUGUGUGUGCUGACAUG---| GA UG A C - AGUCUGUGUGA
ACGU UC C GACUCAGUA UCGG UGUAG U
UGCA AG G CUGGGUCAU AGUC ACAUC U
CACACACGCCCAUCGCACAC^ G- GU A A U GACGAGAAGAC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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| Star sequence |
Dre-Mir-221-P1c_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACUCAGUACUCGGUGUAGAGUC -22
Get sequence
|
|---|
| Mature sequence |
Dre-Mir-221-P1c_3p |
| mirBase accession | MIMAT0011303 |
|---|
| Sequence |
40- AGCUACAUCUGAAUACUGGGUCA -63
Get sequence
|
|---|
| Proposed targets |
TargetScanFish: dre-miR-222b
|
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