| MirGeneDB ID | Loc-Mir-221-P1c |
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| Family name |
MIR-221 (all species) |
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| Species |
Spotted gar (Lepisosteus oculatus) |
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| MiRBase ID |
|
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| Paralogues |
Loc-Mir-221-P1a
Loc-Mir-221-P2a
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| Orthologues |
Aca-Mir-221-P1c
Ami-Mir-221-P1c
Cli-Mir-221-P1c
Cmi-Mir-221-P1c
Cpi-Mir-221-P1c
Dre-Mir-221-P1c
Gga-Mir-221-P1c
Gja-Mir-221-P1c
Lch-Mir-221-P1c
Mun-Mir-221-P1c
Oan-Mir-221-P1c
Pbv-Mir-221-P1c
Spt-Mir-221-P1c
Sto-Mir-221-P1c
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Vertebrata
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Genome context
(LepOcu1) |
LG7: 22704992-22705054 [-]
Ensembl
|
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| Seed |
CUCAGUA |
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Precursor
(pre-Mir +30nt flank) |
GAUCCAGAUGAUCUGUGAUGUCCAUUGCUAGCUCAGUAUUCAGUGUAGAGUCUGUGUGAUAUUCAUACACAGCUACAUCUGAUUACUGGGUCAAUAAUGACAUCAUAAGCAACCUCUAAAGAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GAUCCAGAUGAUCUGUG---| C CUA U - AGUCUGUGUGA
AUGUC AUUG GCUCAGUA UCAG UGUAG U
UACAG UAAU UGGGUCAU AGUC ACAUC A
CAGAAAUCUCCAACGAAUAC^ - AAC U U GACACAUACUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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| Mature sequence |
Loc-Mir-221-P1c_5p |
| mirBase accession | None |
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| Sequence |
0- GCUCAGUAUUCAGUGUAGAGUCU -23
Get sequence
|
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| Co-mature sequence |
Loc-Mir-221-P1c_3p |
| mirBase accession | None |
|---|
| Sequence |
40- AGCUACAUCUGAUUACUGGGUCA -63
Get sequence
|
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