| MirGeneDB ID | Spt-Mir-221-P1c |
|---|---|
| Family name | MIR-221 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-221-P1a Spt-Mir-221-P2a |
| Orthologues | Aca-Mir-221-P1c Ami-Mir-221-P1c Cli-Mir-221-P1c Cmi-Mir-221-P1c Cpi-Mir-221-P1c Dre-Mir-221-P1c Gga-Mir-221-P1c Gja-Mir-221-P1c Lch-Mir-221-P1c Loc-Mir-221-P1c Mun-Mir-221-P1c Oan-Mir-221-P1c Pbv-Mir-221-P1c Sto-Mir-221-P1c |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01014973.1: 1516515-1516581 [+] UCSC Ensembl |
| Seed | GCUACAU |
| Precursor (pre-Mir +30nt flank) |
AGAAGCUCUGGAGACAUGAUGCCAAUGGGCUGCUCAGUAGUUGGUGUAGGAUCUGUCUGACAUUGUUACUAACAGCUACAUCUGAUUACUGGGUCUCCUAUGGCAUCAGCAAUCUGCUGGAAACCUUGet precursor sequence |
| Structure | 10 20 30 40 50 60 AGAAGCUCUGGAGACAU---| A CU UG - GAUCUGUCUGAC GAUGCCA UGGG GCUCAGUAGU G UGUAG A CUACGGU AUCC UGGGUCAUUA C ACAUC U UUCCAAAGGUCGUCUAACGA^ - UC GU U GACAAUCAUUGU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
| Star sequence | Spt-Mir-221-P1c_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UGCUCAGUAGUUGGUGUAGGAUC -23
Get sequence
|
| Mature sequence | Spt-Mir-221-P1c_3p (predicted) |
| mirBase accession | None |
| Sequence |
43- AGCUACAUCUGAUUACUGGGUCUC -67
Get sequence
|
