MirGeneDB 3.0
100 microRNA genes with seed GCUACAU
Sort by genome coordinates Motifs
MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC
Aca-Mir-221-P1a aca-mir-222a MIR-221 GCUACAU MIMAT0021891 MIMAT0021892 3 135997332 135997394 - Gnathostomata Vertebrata No 1 1
Ami-Mir-221-P1a ami-mir-222a MIR-221 GCUACAU MIMAT0038254 MIMAT0038255 NW_017709793.1 2575748 2575810 + Gnathostomata Vertebrata No 1 1
Bta-Mir-221-P1a bta-mir-222 MIR-221 GCUACAU None MIMAT0003530 NC_037357.1 98125949 98126012 + Gnathostomata Vertebrata No 1 1
Cfa-Mir-221-P1a cfa-mir-222 MIR-221 GCUACAU None MIMAT0009851 chrX 39524537 39524600 - Gnathostomata Vertebrata No 1 1
Cli-Mir-221-P1a cli-mir-222a MIR-221 GCUACAU MIMAT0038606 MIMAT0038607 scaffold68 1295199 1295261 + Gnathostomata Vertebrata No 1 1
Cmi-Mir-221-P1a None MIR-221 GCUCAGU None None KI635858.1 3691581 3691641 - Gnathostomata Vertebrata No 1 1 1
Cpi-Mir-221-P1a cpi-mir-222a MIR-221 GCUACAU MIMAT0037852 MIMAT0037853 JH584730 3280756 3280818 - Gnathostomata Vertebrata No 1 1
Cpo-Mir-221-P1a cpo-mir-222 MIR-221 GCUACAU MIMAT0047132 MIMAT0047133 scaffold_33 12034584 12034647 + Gnathostomata Vertebrata No 1 1
Dno-Mir-221-P1a dno-mir-222 MIR-221 GCUACAU MIMAT0047777 MIMAT0047778 JH568173 139430 139493 + Gnathostomata Vertebrata No 1 1
Eca-Mir-221-P1a eca-mir-222 MIR-221 GCUACAU None MIMAT0013204 CM009179.1 38514693 38514756 - Gnathostomata Vertebrata No 1 1
Ete-Mir-221-P1a None MIR-221 GCUACAU None None JH980365 7503744 7503807 + Gnathostomata Vertebrata No 1 1
Gga-Mir-221-P1a gga-mir-222a MIR-221 GCUACAU None None 1 111966551 111966613 + Gnathostomata Vertebrata No 1 1
Gja-Mir-221-P1a None MIR-221 GCUACAU None None NW_015165234.1 1525899 1525961 + Gnathostomata Vertebrata No 1 1
Hsa-Mir-221-P1a hsa-mir-222 MIR-221 GCUACAU MIMAT0004569 MIMAT0000279 chrX 45747033 45747096 - Gnathostomata Vertebrata Yes 1 1
Laf-Mir-221-P1a None MIR-221 GCUACAU None None GL010083.1 5382008 5382071 + Gnathostomata Vertebrata No 1 1
Lch-Mir-221-P1a None MIR-221 GCUACAU None None JH127252.1 52334 52395 + Gnathostomata Vertebrata Unknown 1 1
Loc-Mir-221-P1a None MIR-221 GCUACAU None None LG17 1032091 1032152 + Gnathostomata Vertebrata No 1 1
Mdo-Mir-221-P1a mdo-mir-222a MIR-221 GCUACAU None MIMAT0004159 4 17426702 17426765 + Gnathostomata Vertebrata No 1 1
Mml-Mir-221-P1a mml-mir-222 MIR-221 GCUACAU MIMAT0026849 MIMAT0006250 CM014356.1 45693019 45693082 - Gnathostomata Vertebrata No 1 1
Mmr-Mir-221-P1a mmr-mir-222 MIR-221 GCUACAU None MIMAT0049207 CM007693.1 135099826 135099889 - Gnathostomata Vertebrata Yes 1 1 1
Mmu-Mir-221-P1a mmu-mir-222 MIR-221 GCUACAU MIMAT0017061 MIMAT0000670 chrX 19146900 19146963 - Gnathostomata Vertebrata No 1 1
Mun-Mir-221-P1a None MIR-221 GCUACAU None None LR594635.1 350793061 350793123 + Gnathostomata Vertebrata No 1 1
Neu-Mir-221-P1a None MIR-221 GCUACAU None None CM051817.1 428724590 428724651 + Gnathostomata Vertebrata No 1 1
Oan-Mir-221-P1a oan-mir-222a MIR-221 GCUACAU MIMAT0007132 MIMAT0007133 NC_041745.1 8659576 8659637 + Gnathostomata Vertebrata No 1 1
Ocu-Mir-221-P1a ocu-mir-222 MIR-221 GCUACAU MIMAT0048356 MIMAT0048357 chrX 30973574 30973637 - Gnathostomata Vertebrata No 1 1
Pab-Mir-221-P1a None MIR-221 GCUACAU None None CM054702.2 46079146 46079209 - Gnathostomata Vertebrata No 1 1
Pbv-Mir-221-P1a pbv-mir-222a MIR-221 GCUACAU MIMAT0039033 MIMAT0039034 KE954435.1 197491 197553 + Gnathostomata Vertebrata No 1 1
Rno-Mir-221-P1a rno-mir-222 MIR-221 GCUACAU MIMAT0017164 MIMAT0000891 chrX 3683940 3684003 + Gnathostomata Vertebrata No 1 1
Sha-Mir-221-P1a sha-mir-222 MIR-221 GCUACAU None MIMAT0022796 GL849540.1 1793860 1793923 + Gnathostomata Vertebrata No 1 1
Spt-Mir-221-P1a None MIR-221 GCUACAU None None QEPC01002784.1 165562 165624 + Gnathostomata Vertebrata Unknown 1
Sto-Mir-221-P1a None MIR-221 GCUCAGU None None BFAA01004609.1 227955 228015 + Gnathostomata Vertebrata No 1 1
Tgu-Mir-221-P1a tgu-mir-222-1 MIR-221 GCUACAU MIMAT0026978 MIMAT0014514 1 107894443 107894505 - Gnathostomata Vertebrata No 1 1
Xtr-Mir-221-P1a xtr-mir-222 MIR-221 GCUACAU None MIMAT0003633 chr2 68930297 68930358 + Gnathostomata Vertebrata No 1
Cja-Mir-221-P1a1 None MIR-221 GCUACAU None None CM021937.1 45130695 45130758 - C. jacchus Vertebrata No 1 1 1
Dre-Mir-221-P1a1 dre-mir-222a MIR-221 GCUCAGU MIMAT0031927 MIMAT0001289 chr9 33921481 33921542 - Clupeocephala Vertebrata No 1 1
Gmo-Mir-221-P1a1 gmo-mir-222-2 MIR-221 GCUACAU MIMAT0044030 MIMAT0044031 contig337589 317 378 + Clupeocephala Vertebrata No 1
Mal-Mir-221-P1a1 None MIR-221 GCUACAU None None KV885120.1 273598 273659 + Clupeocephala Vertebrata No 1 1 1
Tni-Mir-221-P1a1 tni-mir-222 MIR-221 GCUACAU None MIMAT0002905 CAAE01017358.1_SCAF17358 560 621 - Clupeocephala Vertebrata No 1 1 1
Cja-Mir-221-P1a2 None MIR-221 GCUACAU None None CM021931.1 25218553 25218616 + C. jacchus Vertebrata No 1
Gmo-Mir-221-P1a2 gmo-mir-222-1 MIR-221 GCUACAU MIMAT0044326 MIMAT0044031 scaffold00071 21723 21784 + Clupeocephala Vertebrata No 1 1
Mal-Mir-221-P1a2 None MIR-221 GCUACAU None None KV884973.1 417174 417235 + Clupeocephala Vertebrata No 1
Xla-Mir-221-P1a3 None MIR-221 GCUACAU None None NC_030726.1 77928376 77928437 - X. laevis Vertebrata No 1
Xla-Mir-221-P1a4 xla-mir-222 MIR-221 GCUACAU MIMAT0046544 MIMAT0046545 NC_030727.1 44885774 44885835 + X. laevis Vertebrata No 1
Aca-Mir-221-P1c None MIR-221 GCUACAU None None GL343528.1 405279 405342 + Gnathostomata Vertebrata Yes 1 1
Ami-Mir-221-P1c ami-mir-222b MIR-221 GCUACAU MIMAT0038256 MIMAT0038257 NW_017708049.1 5891729 5891795 + Gnathostomata Vertebrata Yes 1 1 1
Cli-Mir-221-P1c cli-mir-222b MIR-221 GCUACAU None MIMAT0038608 scaffold72 1257573 1257639 + Gnathostomata Vertebrata Yes 1 1
Cmi-Mir-221-P1c None MIR-221 GCUACAU None None KI635856.1 1950754 1950817 + Gnathostomata Vertebrata No 1
Cpi-Mir-221-P1c cpi-mir-222b MIR-221 GCUACAU MIMAT0037854 MIMAT0037855 JH584724 419807 419873 + Gnathostomata Vertebrata Yes 1 1
Dre-Mir-221-P1c dre-mir-222b MIR-221 GCUACAU None MIMAT0011303 chr21 44568190 44568252 - Gnathostomata Vertebrata No 1 1
Gga-Mir-221-P1c gga-mir-222b MIR-221 GCUACAU MIMAT0025617 MIMAT0025618 4 2169328 2169394 + Gnathostomata Vertebrata Yes 1
Gja-Mir-221-P1c None MIR-221 GCUACAU None None NW_015224181.1 293 356 + Gnathostomata Vertebrata Unknown 1 1
Lch-Mir-221-P1c None MIR-221 GCUACAU None None JH126781.1 1065197 1065261 + Gnathostomata Vertebrata Unknown 1
Loc-Mir-221-P1c None MIR-221 CUCAGUA None None LG7 22704992 22705054 - Gnathostomata Vertebrata Yes 1 1
Mun-Mir-221-P1c None MIR-221 GCUACAU None None LR594638.1 67393590 67393656 + Gnathostomata Vertebrata Unknown 1 1
Oan-Mir-221-P1c oan-mir-222b-1 MIR-221 GCUACAU MIMAT0007056 MIMAT0007057 NC_041733.1 13691892 13691958 - Gnathostomata Vertebrata Yes 1 1
Pbv-Mir-221-P1c pbv-mir-222b MIR-221 GCUACAU MIMAT0039035 MIMAT0039036 KE955174.1 151359 151422 + Gnathostomata Vertebrata Yes 1 1 1
Spt-Mir-221-P1c None MIR-221 GCUACAU None None QEPC01014973.1 1516515 1516581 + Gnathostomata Vertebrata Unknown 1 1 1
Sto-Mir-221-P1c None MIR-221 GCUACAU None None BFAA01003200.1 196698 196761 - Gnathostomata Vertebrata Yes 1
Pma-Mir-221-P1o1 pma-mir-222 MIR-221 GCUACAU MIMAT0019533 MIMAT0019534 NC_046138.1 4279200 4279261 - P. marinus Vertebrata No 1 1
Aca-Mir-221-P2a aca-mir-221 MIR-221 GCUACAU MIMAT0021889 MIMAT0021890 3 135996388 135996448 - Gnathostomata Vertebrata No 1
Bta-Mir-221-P2a bta-mir-221 MIR-221 GCUACAU None MIMAT0003529 NC_037357.1 98126639 98126701 + Gnathostomata Vertebrata No
Cfa-Mir-221-P2a cfa-mir-221 MIR-221 GCUACAU None MIMAT0006757 chrX 39523889 39523951 - Gnathostomata Vertebrata No
Cja-Mir-221-P2a None MIR-221 GCUACAU None None CM021937.1 45129967 45130029 - Gnathostomata Vertebrata No
Cli-Mir-221-P2a cli-mir-221 MIR-221 GCUACAU MIMAT0038604 MIMAT0038605 scaffold68 1295720 1295782 + Gnathostomata Vertebrata No 1
Cpo-Mir-221-P2a cpo-mir-221 MIR-221 GCUACAU MIMAT0047130 MIMAT0047131 scaffold_33 12035274 12035336 + Gnathostomata Vertebrata No
Dno-Mir-221-P2a dno-mir-221 MIR-221 GCUACAU MIMAT0047775 MIMAT0047776 JH568173 140066 140128 + Gnathostomata Vertebrata No
Eca-Mir-221-P2a eca-mir-221 MIR-221 GCUACAU None MIMAT0013203 CM009179.1 38513919 38513982 - Gnathostomata Vertebrata No
Ete-Mir-221-P2a None MIR-221 GCUACAU None None JH980365 7504387 7504449 + Gnathostomata Vertebrata No
Gga-Mir-221-P2a gga-mir-221 MIR-221 GCUACAU MIMAT0026494 MIMAT0001108 1 111967061 111967123 + Gnathostomata Vertebrata No
Gja-Mir-221-P2a None MIR-221 GCUACAU None None NW_015165234.1 1526266 1526328 + Gnathostomata Vertebrata No 1
Hsa-Mir-221-P2a hsa-mir-221 MIR-221 GCUACAU MIMAT0004568 MIMAT0000278 chrX 45746180 45746242 - Gnathostomata Vertebrata No
Laf-Mir-221-P2a None MIR-221 GCUACAU None None GL010083.1 5382694 5382756 + Gnathostomata Vertebrata No
Lch-Mir-221-P2a None MIR-221 GCUACAU None None JH127252.1 53102 53164 + Gnathostomata Vertebrata Unknown
Loc-Mir-221-P2a None MIR-221 GCUACAU None None LG17 1034012 1034074 + Gnathostomata Vertebrata No 1
Mdo-Mir-221-P2a mdo-mir-221 MIR-221 GCUACAU MIMAT0026701 MIMAT0004160 4 17427286 17427348 + Gnathostomata Vertebrata No
Mml-Mir-221-P2a mml-mir-221 MIR-221 GCUACAU MIMAT0026590 MIMAT0002583 CM014356.1 45692171 45692233 - Gnathostomata Vertebrata No
Mmr-Mir-221-P2a mmr-mir-221 MIR-221 GCUACAU None MIMAT0049144 CM007693.1 135099142 135099204 - Gnathostomata Vertebrata No
Mmu-Mir-221-P2a mmu-mir-221 MIR-221 GCUACAU MIMAT0017060 MIMAT0000669 chrX 19146307 19146369 - Gnathostomata Vertebrata No
Mun-Mir-221-P2a None MIR-221 GCUACAU None None LR594635.1 350794779 350794840 + Gnathostomata Vertebrata No
Neu-Mir-221-P2a None MIR-221 GCUACAU None None CM051817.1 428725175 428725237 + Gnathostomata Vertebrata No
Ocu-Mir-221-P2a ocu-mir-221 MIR-221 GCUACAU MIMAT0048354 MIMAT0048355 chrX 30972910 30972972 - Gnathostomata Vertebrata No
Pab-Mir-221-P2a None MIR-221 CCUGGCA None None CM054702.2 46078331 46078393 - Gnathostomata Vertebrata No
Pbv-Mir-221-P2a pbv-mir-221 MIR-221 GCUACAU MIMAT0039031 MIMAT0039032 KE954435.1 198745 198806 + Gnathostomata Vertebrata No
Rno-Mir-221-P2a rno-mir-221 MIR-221 GCUACAU MIMAT0017163 MIMAT0000890 chrX 3684504 3684566 + Gnathostomata Vertebrata No
Sha-Mir-221-P2a sha-mir-221 MIR-221 GCUACAU None MIMAT0022797 GL849540.1 1794451 1794513 + Gnathostomata Vertebrata No
Spt-Mir-221-P2a None MIR-221 GCUACAU None None QEPC01002784.1 166019 166081 + Gnathostomata Vertebrata Unknown 1 1
Tgu-Mir-221-P2a tgu-mir-221 MIR-221 GCUACAU MIMAT0026976 MIMAT0014512 1 107893928 107893990 - Gnathostomata Vertebrata No 1
Xtr-Mir-221-P2a xtr-mir-221 MIR-221 GCUACAU None MIMAT0003700 chr2 68930823 68930885 + Gnathostomata Vertebrata No
Dre-Mir-221-P2a1 dre-mir-221 MIR-221 GCUACAU MIMAT0031926 MIMAT0001288 chr9 33920955 33921017 - Clupeocephala Vertebrata No 1 1
Gmo-Mir-221-P2a1 gmo-mir-221-1 MIR-221 GCUACAU MIMAT0044032 MIMAT0044022 contig337589 767 830 + Clupeocephala Vertebrata No 1
Mal-Mir-221-P2a1 None MIR-221 GCUACAU None None KV885120.1 274060 274123 + Clupeocephala Vertebrata No 1 1
Tni-Mir-221-P2a1 tni-mir-221 MIR-221 GCUACAU None MIMAT0002907 CAAE01017358.1_SCAF17358 254 317 - Clupeocephala Vertebrata No 1 1
Dre-Mir-221-P2a2 None MIR-221 GCUACAU None None chr6 59901710 59901774 - Clupeocephala Vertebrata No 1 1
Gmo-Mir-221-P2a2 gmo-mir-221-2 MIR-221 GCUACAU MIMAT0044021 MIMAT0044022 contig307202 158 220 - Clupeocephala Vertebrata No 1 1
Mal-Mir-221-P2a2 None MIR-221 GCUACAU None None KV884973.1 417542 417604 + Clupeocephala Vertebrata No 1 1
Xla-Mir-221-P2a3 None MIR-221 GCUACAU None None NC_030726.1 77927829 77927891 - X. laevis Vertebrata No 1
Xla-Mir-221-P2a4 xla-mir-221 MIR-221 GCUACAU MIMAT0046542 MIMAT0046543 NC_030727.1 44886234 44886296 + X. laevis Vertebrata No
Ebu-Mir-221-P2e None MIR-221 GCUACAU None None FYBX02010127.1 1809220 1809281 - E. burgeri Vertebrata Yes
Pma-Mir-221-P2o1 pma-mir-221 MIR-221 GCUACAU None MIMAT0019532 NC_046138.1 4278405 4278466 - P. marinus Vertebrata No 1
Asp-Novel-1-P1 None ASP-NOVEL-1 GCUACAU None None JAOWCC010000853.1 19983586 19983639 + Actinernus sp. Actinernus sp. No

(red - mature/co-mature, blue - star)

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