MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-221-P1a

Family name MIR-221 (all species)
Species Cow (Bos taurus)
MiRBase ID bta-mir-222
Paralogues Bta-Mir-221-P2a 
Orthologues Aca-Mir-221-P1a  Ami-Mir-221-P1a  Cfa-Mir-221-P1a  Cja-Mir-221-P1a1  Cja-Mir-221-P1a2  Cli-Mir-221-P1a  Cmi-Mir-221-P1a  Cpi-Mir-221-P1a  Cpo-Mir-221-P1a  Dno-Mir-221-P1a  Dre-Mir-221-P1a1  Eca-Mir-221-P1a  Ete-Mir-221-P1a  Gga-Mir-221-P1a  Gja-Mir-221-P1a  Gmo-Mir-221-P1a1  Gmo-Mir-221-P1a2  Hsa-Mir-221-P1a  Laf-Mir-221-P1a  Lch-Mir-221-P1a  Loc-Mir-221-P1a  Mal-Mir-221-P1a1  Mal-Mir-221-P1a2  Mdo-Mir-221-P1a  Mml-Mir-221-P1a  Mmr-Mir-221-P1a  Mmu-Mir-221-P1a  Mun-Mir-221-P1a  Neu-Mir-221-P1a  Oan-Mir-221-P1a  Ocu-Mir-221-P1a  Pab-Mir-221-P1a  Pbv-Mir-221-P1a  Rno-Mir-221-P1a  Sha-Mir-221-P1a  Spt-Mir-221-P1a  Sto-Mir-221-P1a  Tgu-Mir-221-P1a  Tni-Mir-221-P1a1  Xla-Mir-221-P1a3  Xla-Mir-221-P1a4  Xtr-Mir-221-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037357.1: 98125949-98126012 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-221-P1a)		 Mir-221-P1a NC_037357.1: 98125949-98126012 [+] UCSC Ensembl
Mir-221-P2a NC_037357.1: 98126639-98126701 [+] UCSC Ensembl
Seed GCUACAU
Precursor
(pre-Mir +30nt flank)		 
UAGCUGCUGGAAUGUGUAGGUACCCUCAAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUGAUGGCAUCUUCUACCUUCAGUUACUGUG
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Structure
        10          20        30        40         50        60 
UAGCUGCUGGAAUGUGU--    A  C   AU              -|    AUCCUGUCUUU 
                   AGGU CC UCA  GGCUCAGUAGCCAG UGUAG           \
                   UCUA GG AGU  CUGGGUCAUCGGUC ACAUC           U
GUGUCAUUGACUUCCAUCU    C  U   CU              U^    GAUGACUAAUG 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-221-P1a_5p*
mirBase accessionNone
Sequence 
0- GGCUCAGUAGCCAGUGUAGAUCC -23
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Mature sequence

Bta-Mir-221-P1a_3p
mirBase accessionMIMAT0003530
Sequence 
40- AGCUACAUCUGGCUACUGGGUCUC -64
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Proposed targets TargetScanVert: bta-miR-222