MirGeneDB 2.1

MirGeneDB ID

Dno-Mir-221-P1a

Family name MIR-221 (all species)
Seed GCUACAU
Species Nine-banded armadillo (Dasypus novemcinctus)
MiRBase ID dno-mir-222
Paralogues Dno-Mir-221-P2a 
Orthologues Aca-Mir-221-P1a  Ami-Mir-221-P1a  Bta-Mir-221-P1a  Cfa-Mir-221-P1a  Cli-Mir-221-P1a  Cmi-Mir-221-P1a  Cpi-Mir-221-P1a  Cpo-Mir-221-P1a  Dre-Mir-221-P1a1  Ete-Mir-221-P1a  Gga-Mir-221-P1a  Gja-Mir-221-P1a  Gmo-Mir-221-P1a1  Gmo-Mir-221-P1a2  Hsa-Mir-221-P1a  Lch-Mir-221-P1a  Loc-Mir-221-P1a  Mal-Mir-221-P1a1  Mal-Mir-221-P1a2  Mdo-Mir-221-P1a  Mml-Mir-221-P1a  Mmu-Mir-221-P1a  Mun-Mir-221-P1a  Oan-Mir-221-P1a  Ocu-Mir-221-P1a  Pbv-Mir-221-P1a  Rno-Mir-221-P1a  Sha-Mir-221-P1a  Spt-Mir-221-P1a  Sto-Mir-221-P1a  Tgu-Mir-221-P1a  Tni-Mir-221-P1a1  Xla-Mir-221-P1a3  Xla-Mir-221-P1a4  Xtr-Mir-221-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(dasNov3)
JH568173: 139430-139493 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-221-P1a)
Mir-221-P1a JH568173: 139430-139493 [+] UCSC Ensembl
Mir-221-P2a JH568173: 140066-140128 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCUGCUGGAAUGUAGAGAUGCCCCUCAAAGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUGAUGACAUCUACUAGCUUCUGUCACAGUG
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Structure
        10           20        30        40         50        60 
AGCUGCUGGAAUGUAGA---|   CCCC   A               -     AUCCUGUCUUU 
                    GAUG    UCA AGGCUCAGUAGCCAG UGUAG           \
                    CUAC    AGU UCUGGGUCAUCGGUC ACAUC           U
GUGACACUGUCUUCGAUCAU^   AGU-   C               U     GACGACUAAUG 
  120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Star sequence

Dno-Mir-221-P1a_5p*

mirBase accessionMIMAT0047777
Sequence
0- GGCUCAGUAGCCAGUGUAGAUCC -23
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Mature sequence

Dno-Mir-221-P1a_3p

mirBase accessionMIMAT0047778
Sequence
40- AGCUACAUCUGGCUACUGGGUCUC -64
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