MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-221-P1a

Family name MIR-221 (all species)
Seed GCUACAU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-222a
Paralogues Ami-Mir-221-P1b  Ami-Mir-221-P2a 
Orthologues Aca-Mir-221-P1a  Bta-Mir-221-P1a  Cfa-Mir-221-P1a  Cli-Mir-221-P1a  Cmi-Mir-221-P1a  Cpi-Mir-221-P1a  Cpo-Mir-221-P1a  Dno-Mir-221-P1a  Dre-Mir-221-P1a1  Ete-Mir-221-P1a  Gga-Mir-221-P1a  Gja-Mir-221-P1a  Gmo-Mir-221-P1a1  Gmo-Mir-221-P1a2  Hsa-Mir-221-P1a  Lch-Mir-221-P1a  Loc-Mir-221-P1a  Mal-Mir-221-P1a1  Mal-Mir-221-P1a2  Mdo-Mir-221-P1a  Mml-Mir-221-P1a  Mmu-Mir-221-P1a  Mun-Mir-221-P1a  Oan-Mir-221-P1a  Ocu-Mir-221-P1a  Pbv-Mir-221-P1a  Rno-Mir-221-P1a  Sha-Mir-221-P1a  Spt-Mir-221-P1a  Sto-Mir-221-P1a  Tgu-Mir-221-P1a  Tni-Mir-221-P1a1  Xla-Mir-221-P1a3  Xla-Mir-221-P1a4  Xtr-Mir-221-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017709793.1: 2575748-2575810 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-221-P1a)
Mir-221-P1a NW_017709793.1: 2575748-2575810 [+] UCSC
Mir-221-P2a NW_017709793.1: 2576314-2576376 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UCAACUCAGAACUCAUAGUUGCCCAUCAAUCGCUCAGUAGUCAGUGUAGAUUCUGUUUUUACAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUGAUGACAUCUUGUAGCUUCCACAUGGUUU
Get precursor sequence
Structure
        10        20          30        40         50        60
UCAACUCAGAACUCAUAGUUGCC--     AUC             -|    AUUCUGUUUU 
                         CAUCA   GCUCAGUAGUCAG UGUAG          U
                         GUAGU   UGGGUCAUCGGUC ACAUC          A
UUUGGUACACCUUCGAUGUUCUACA     CUC             U^    GACGACUAAC 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Star sequence

Ami-Mir-221-P1a_5p* (predicted)

mirBase accessionMIMAT0038254
Sequence
0- CGCUCAGUAGUCAGUGUAGAUUC -23
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Mature sequence

Ami-Mir-221-P1a_3p

mirBase accessionMIMAT0038255
Sequence
39- AGCUACAUCUGGCUACUGGGUCUC -63
Get sequence