MirGeneDB 2.1

MirGeneDB ID

Mal-Mir-221-P1a1

Family name MIR-221 (all species)
Seed GCUACAU
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-221-P1a2  Mal-Mir-221-P2a1  Mal-Mir-221-P2a2 
Orthologues Aca-Mir-221-P1a  Ami-Mir-221-P1a  Bta-Mir-221-P1a  Cfa-Mir-221-P1a  Cli-Mir-221-P1a  Cmi-Mir-221-P1a  Cpi-Mir-221-P1a  Cpo-Mir-221-P1a  Dno-Mir-221-P1a  Dre-Mir-221-P1a1  Ete-Mir-221-P1a  Gga-Mir-221-P1a  Gja-Mir-221-P1a  Gmo-Mir-221-P1a1  Hsa-Mir-221-P1a  Lch-Mir-221-P1a  Loc-Mir-221-P1a  Mdo-Mir-221-P1a  Mml-Mir-221-P1a  Mmu-Mir-221-P1a  Mun-Mir-221-P1a  Oan-Mir-221-P1a  Ocu-Mir-221-P1a  Pbv-Mir-221-P1a  Rno-Mir-221-P1a  Sha-Mir-221-P1a  Spt-Mir-221-P1a  Sto-Mir-221-P1a  Tgu-Mir-221-P1a  Tni-Mir-221-P1a1  Xtr-Mir-221-P1a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)
KV885120.1: 273598-273659 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGGUUCACAGUUCUCUGGCUGCUGUCAGUUGCUCAGUAGGCAGUGUAGAUCCUGUGUAGCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUGACGGCUCUGCCUACUUCCUGGUCAACCA
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Structure
        10        20          30        40         50          
GCGGUUCACAGUUCUCUG  U--        UU         G   -|    AUCCUGUGUA 
                  GC   GCUGUCAG  GCUCAGUAG CAG UGUAG          \
                  CG   CGGCAGUC  UGGGUCAUC GUC ACAUC          G
ACCAACUGGUCCUUCAUC  UCU        UC         G   U^    GACGACUAAC 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-221-P1a1_5p*

mirBase accessionNone
Sequence
0- UGCUCAGUAGGCAGUGUAGAUCC -23
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Mature sequence

Mal-Mir-221-P1a1_3p

mirBase accessionNone
Sequence
38- AGCUACAUCUGGCUACUGGGUCUC -62
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