MirGeneDB 2.1
MirGeneDB ID

Pbv-Mir-221-P1a

Family name MIR-221 (all species)
Seed GCUACAU
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-222a
Paralogues Pbv-Mir-221-P1b  Pbv-Mir-221-P2a 
Orthologues Aca-Mir-221-P1a  Ami-Mir-221-P1a  Bta-Mir-221-P1a  Cfa-Mir-221-P1a  Cli-Mir-221-P1a  Cmi-Mir-221-P1a  Cpi-Mir-221-P1a  Cpo-Mir-221-P1a  Dno-Mir-221-P1a  Dre-Mir-221-P1a1  Ete-Mir-221-P1a  Gga-Mir-221-P1a  Gja-Mir-221-P1a  Gmo-Mir-221-P1a1  Gmo-Mir-221-P1a2  Hsa-Mir-221-P1a  Lch-Mir-221-P1a  Loc-Mir-221-P1a  Mal-Mir-221-P1a1  Mal-Mir-221-P1a2  Mdo-Mir-221-P1a  Mml-Mir-221-P1a  Mmu-Mir-221-P1a  Mun-Mir-221-P1a  Oan-Mir-221-P1a  Ocu-Mir-221-P1a  Rno-Mir-221-P1a  Sha-Mir-221-P1a  Spt-Mir-221-P1a  Sto-Mir-221-P1a  Tgu-Mir-221-P1a  Tni-Mir-221-P1a1  Xla-Mir-221-P1a3  Xla-Mir-221-P1a4  Xtr-Mir-221-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)		 KE954435.1: 197491-197553 [+]
Clustered miRNAs
(< 50kb from Mir-221-P1a)		 Mir-221-P1a KE954435.1: 197491-197553 [+]
Mir-221-P2a KE954435.1: 198745-198806 [+]
Precursor
(pre-Mir +30nt flank)
AUGGUCCAGAAACUUAAGCUGCUCAUCAGUCGCUCAGUAGUCAGUGUAGAUUCUGUUUCUUCGGUCAGCAGCUACAUCUGGCUACUGGGUCUCUGAAGACGUCUUGUAGCAGCUGGUCACUGU
Get precursor sequence
Structure
        10        20          30        40         50        60
AUGGUCCAGAAACUUAAGCU-  -  A    UC             -|    AUUCUGUUUC 
                     GC UC UCAG  GCUCAGUAGUCAG UGUAG          U
                     UG AG AGUC  UGGGUCAUCGGUC ACAUC          U
UGUCACUGGUCGACGAUGUUC  C  A    UC             U^    GACGACUGGC 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Pbv-Mir-221-P1a_5p*
mirBase accessionMIMAT0039033
Sequence 
0- CGCUCAGUAGUCAGUGUAGAUUC -23
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Mature sequence

Pbv-Mir-221-P1a_3p
mirBase accessionMIMAT0039034
Sequence 
39- AGCUACAUCUGGCUACUGGGUCUC -63
Get sequence