| MirGeneDB ID | Lch-Mir-221-P1a |
|---|---|
| Family name | MIR-221 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-221-P1c Lch-Mir-221-P2a |
| Orthologues | Aca-Mir-221-P1a Ami-Mir-221-P1a Bta-Mir-221-P1a Cfa-Mir-221-P1a Cja-Mir-221-P1a1 Cja-Mir-221-P1a2 Cli-Mir-221-P1a Cmi-Mir-221-P1a Cpi-Mir-221-P1a Cpo-Mir-221-P1a Dno-Mir-221-P1a Dre-Mir-221-P1a1 Eca-Mir-221-P1a Ete-Mir-221-P1a Gga-Mir-221-P1a Gja-Mir-221-P1a Gmo-Mir-221-P1a1 Gmo-Mir-221-P1a2 Hsa-Mir-221-P1a Laf-Mir-221-P1a Loc-Mir-221-P1a Mal-Mir-221-P1a1 Mal-Mir-221-P1a2 Mdo-Mir-221-P1a Mml-Mir-221-P1a Mmr-Mir-221-P1a Mmu-Mir-221-P1a Mun-Mir-221-P1a Neu-Mir-221-P1a Oan-Mir-221-P1a Ocu-Mir-221-P1a Pab-Mir-221-P1a Pbv-Mir-221-P1a Rno-Mir-221-P1a Sha-Mir-221-P1a Spt-Mir-221-P1a Sto-Mir-221-P1a Tgu-Mir-221-P1a Tni-Mir-221-P1a1 Xla-Mir-221-P1a3 Xla-Mir-221-P1a4 Xtr-Mir-221-P1a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH127252.1: 52334-52395 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-221-P1a) |
Mir-221-P1a
JH127252.1: 52334-52395 [+]
Ensembl
Mir-221-P2a JH127252.1: 53102-53164 [+] Ensembl |
| Seed | GCUACAU |
| Precursor (pre-Mir +30nt flank) |
AUCGAUUUGAGCUUAUAGUUGUCCAUGAGUUGCUCAGUAGUCAGUGUAGAUUCUGUGUCUCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUAAUGGCAACACAAACUUCCAGUUGGCGCCGet precursor sequence |
| Structure | 10 20 30 40 50 AUCGAUUUGAGCUUAUA---| U G UU - AUUCUGUGUC GUUG CCAU AG GCUCAGUAGUCAG UGUAG \ CAAC GGUA UC UGGGUCAUCGGUC ACAUC U CCGCGGUUGACCUUCAAACA^ - A UC U GACGACUAAC 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Star sequence | Lch-Mir-221-P1a_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UGCUCAGUAGUCAGUGUAGAUUC -23
Get sequence
|
| Mature sequence | Lch-Mir-221-P1a_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- AGCUACAUCUGGCUACUGGGUCUC -62
Get sequence
|
