| MirGeneDB ID | Lch-Mir-221-P2a |
|---|---|
| Family name | MIR-221 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-221-P1a Lch-Mir-221-P1c |
| Orthologues | Aca-Mir-221-P2a Ami-Mir-221-P2a Bta-Mir-221-P2a Cfa-Mir-221-P2a Cja-Mir-221-P2a Cli-Mir-221-P2a Cmi-Mir-221-P2a Cpi-Mir-221-P2a Cpo-Mir-221-P2a Dno-Mir-221-P2a Dre-Mir-221-P2a1 Dre-Mir-221-P2a2 Eca-Mir-221-P2a Ete-Mir-221-P2a Gga-Mir-221-P2a Gja-Mir-221-P2a Gmo-Mir-221-P2a1 Gmo-Mir-221-P2a2 Hsa-Mir-221-P2a Laf-Mir-221-P2a Loc-Mir-221-P2a Mal-Mir-221-P2a1 Mal-Mir-221-P2a2 Mdo-Mir-221-P2a Mml-Mir-221-P2a Mmr-Mir-221-P2a Mmu-Mir-221-P2a Mun-Mir-221-P2a Neu-Mir-221-P2a Oan-Mir-221-P2a Ocu-Mir-221-P2a Pab-Mir-221-P2a Pbv-Mir-221-P2a Rno-Mir-221-P2a Sha-Mir-221-P2a Spt-Mir-221-P2a Sto-Mir-221-P2a Tgu-Mir-221-P2a Tni-Mir-221-P2a1 Xla-Mir-221-P2a3 Xla-Mir-221-P2a4 Xtr-Mir-221-P2a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH127252.1: 53102-53164 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-221-P2a) |
Mir-221-P1a
JH127252.1: 52334-52395 [+]
Ensembl
Mir-221-P2a JH127252.1: 53102-53164 [+] Ensembl |
| Seed | GCUACAU |
| Precursor (pre-Mir +30nt flank) |
GAGGGAGGCUUAUCCAGGUCUUGGGCAUGAACCUGGCAUACAAUGUAGAAUCCUGUGUUAGAAUAGCAACAGCUACAUUGUCUGCUGGGUUUCAGGCUACCUGGAAGUGCAUAUGGACUGUGAGet precursor sequence |
| Structure | 10 20 30 40 50 60 GAGGGAGGCUUAUCCAGG UG-- A -| UG U AAUCCUGUGUU UCU GGC UG AACC GCA ACAAUGUAG A AGG UCG AC UUGG CGU UGUUACAUC G AGUGUCAGGUAUACGUGA UCCA G U^ GU C GACAACGAUAA 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Star sequence | Lch-Mir-221-P2a_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- ACCUGGCAUACAAUGUAGAAUC -22
Get sequence
|
| Mature sequence | Lch-Mir-221-P2a_3p (predicted) |
| mirBase accession | None |
| Sequence |
40- AGCUACAUUGUCUGCUGGGUUUC -63
Get sequence
|
