Mir-221-P2a

MirGeneDB ID

Oan-Mir-221-P2a

Family name

MIR-221 (all species)

Seed

CCUGGCA

Species

Platypus (Ornithorhynchus anatinus)

MiRBase ID

oan-mir-221

Paralogues

Oan-Mir-221-P1a Oan-Mir-221-P1b

Orthologues

Aca-Mir-221-P2a Ami-Mir-221-P2a Bta-Mir-221-P2a Cfa-Mir-221-P2a Cli-Mir-221-P2a Cmi-Mir-221-P2a Cpi-Mir-221-P2a Cpo-Mir-221-P2a Dno-Mir-221-P2a Dre-Mir-221-P2a1 Dre-Mir-221-P2a2 Ete-Mir-221-P2a Gga-Mir-221-P2a Gja-Mir-221-P2a Gmo-Mir-221-P2a1 Gmo-Mir-221-P2a2 Hsa-Mir-221-P2a Lch-Mir-221-P2a Loc-Mir-221-P2a Mal-Mir-221-P2a1 Mal-Mir-221-P2a2 Mdo-Mir-221-P2a Mml-Mir-221-P2a Mmu-Mir-221-P2a Mun-Mir-221-P2a Ocu-Mir-221-P2a Pbv-Mir-221-P2a Rno-Mir-221-P2a Sha-Mir-221-P2a Spt-Mir-221-P2a Sto-Mir-221-P2a Tgu-Mir-221-P2a Tni-Mir-221-P2a1 Xla-Mir-221-P2a3 Xla-Mir-221-P2a4 Xtr-Mir-221-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mOrnAna1.p.v1_plustraces)

NC_041745.1: 8660201-8660263 [+]

Clustered miRNAs
(< 50kb from Mir-221-P2a)

Mir-221-P1a NC_041745.1: 8659576-8659637 [+]
Mir-221-P2a NC_041745.1: 8660201-8660263 [+]

Precursor
(pre-Mir +30nt flank)

GUAGGACGACCAUUCAGGUUUGAGGCAUGAACCUGGCAUACAAUGUAGAAUUCUGUAUUUGUUAAGCAACAGCUACAUUGUCUGCUGGGUUUCAAGCUACCUGGAAAUGUACACUCAGUGACU

Get precursor sequence

Structure

        10        20           30        40        50        60
GUAGGACGACCAUUCAGGUUUGA--   A  -|   UG   U         AAUUCUGUAUU 
                         GGC UG AACC  GCA ACAAUGUAG           U
                         UCG AC UUGG  CGU UGUUACAUC           G
UCAGUGACUCACAUGUAAAGGUCCA   A  U^   GU   C         GACAACGAAUU 
 120       110       100        90        80        70