MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-221-P2a3

Family name MIR-221 (all species)
Seed GCUACAU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-221-P1a3  Xla-Mir-221-P1a4  Xla-Mir-221-P2a4 
Orthologues Aca-Mir-221-P2a  Ami-Mir-221-P2a  Bta-Mir-221-P2a  Cfa-Mir-221-P2a  Cli-Mir-221-P2a  Cmi-Mir-221-P2a  Cpi-Mir-221-P2a  Cpo-Mir-221-P2a  Dno-Mir-221-P2a  Ete-Mir-221-P2a  Gga-Mir-221-P2a  Gja-Mir-221-P2a  Hsa-Mir-221-P2a  Lch-Mir-221-P2a  Loc-Mir-221-P2a  Mdo-Mir-221-P2a  Mml-Mir-221-P2a  Mmu-Mir-221-P2a  Mun-Mir-221-P2a  Oan-Mir-221-P2a  Ocu-Mir-221-P2a  Pbv-Mir-221-P2a  Rno-Mir-221-P2a  Sha-Mir-221-P2a  Spt-Mir-221-P2a  Sto-Mir-221-P2a  Tgu-Mir-221-P2a  Xtr-Mir-221-P2a 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030726.1: 77927829-77927891 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAAGAGGACAACAGUGAAUUUGGCAUGCACCUGGCAUACAAUGUAGAAAACUGUGUUUGCAAAGCAACAGCUACAUUGUCUGCUGGGUUUCAUGCUGAAUUGAAUUAUUCGUCCAUACAAA
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Structure
        10          20        30         40        50        60  
AAAAAGAGGACAACAGUG--    UG     C-|  UG   U         AAAA    GUUUG 
                    AAUU  GCAUG  ACC  GCA ACAAUGUAG    CUGU     C
                    UUAA  CGUAC  UGG  CGU UGUUACAUC    GACA     A
AAACAUACCUGCUUAUUAAG    GU     UU^  GU   C         ----    ACGAA 
 120       110       100        90        80            70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Eg He Re St St St St
Star sequence

Xla-Mir-221-P2a3_5p*
mirBase accessionNone
Sequence 
0- ACCUGGCAUACAAUGUAGAAAACUGU -26
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Mature sequence

Xla-Mir-221-P2a3_3p
mirBase accessionNone
Sequence 
40- AGCUACAUUGUCUGCUGGGUUUC -63
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