MirGeneDB 2.1
MirGeneDB ID

Cli-Mir-221-P2a

Family name MIR-221 (all species)
Seed GCUACAU
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-221
Paralogues Cli-Mir-221-P1a  Cli-Mir-221-P1b 
Orthologues Aca-Mir-221-P2a  Ami-Mir-221-P2a  Bta-Mir-221-P2a  Cfa-Mir-221-P2a  Cmi-Mir-221-P2a  Cpi-Mir-221-P2a  Cpo-Mir-221-P2a  Dno-Mir-221-P2a  Dre-Mir-221-P2a1  Dre-Mir-221-P2a2  Ete-Mir-221-P2a  Gga-Mir-221-P2a  Gja-Mir-221-P2a  Gmo-Mir-221-P2a1  Gmo-Mir-221-P2a2  Hsa-Mir-221-P2a  Lch-Mir-221-P2a  Loc-Mir-221-P2a  Mal-Mir-221-P2a1  Mal-Mir-221-P2a2  Mdo-Mir-221-P2a  Mml-Mir-221-P2a  Mmu-Mir-221-P2a  Mun-Mir-221-P2a  Oan-Mir-221-P2a  Ocu-Mir-221-P2a  Pbv-Mir-221-P2a  Rno-Mir-221-P2a  Sha-Mir-221-P2a  Spt-Mir-221-P2a  Sto-Mir-221-P2a  Tgu-Mir-221-P2a  Tni-Mir-221-P2a1  Xla-Mir-221-P2a3  Xla-Mir-221-P2a4  Xtr-Mir-221-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)		 scaffold68: 1295720-1295782 [+]
Clustered miRNAs
(< 50kb from Mir-221-P2a)		 Mir-221-P1a scaffold68: 1295199-1295261 [+]
Mir-221-P2a scaffold68: 1295720-1295782 [+]
Precursor
(pre-Mir +30nt flank)
AUAGGAAGACUGUCCAGGUUUGGGGCAUGAACCUGGCAUACAAUGUAGAUUUCUGUGUUUGUUAAGCAACAGCUACAUUGUCUGCUGGGUUUCCAGCUGCCUGGAAAUACAAAGUGGAGGGGU
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Structure
        10        20            30        40        50        60
AUAGGAAGACUGUCCAGGU  G     U----|    UG   U         AUUUCUGUGUU 
                   UU GGGCA     GAACC  GCA ACAAUGUAG           U
                   AG UCCGU     UUUGG  CGU UGUUACAUC           G
UGGGGAGGUGAAACAUAA-  G     CGACC^    GU   C         GACAACGAAUU 
 120       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Cl Cl Cl Cl Cl To
Star sequence

Cli-Mir-221-P2a_5p*
mirBase accessionMIMAT0038604
Sequence 
0- ACCUGGCAUACAAUGUAGAUUUC -23
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Mature sequence

Cli-Mir-221-P2a_3p
mirBase accessionMIMAT0038605
Sequence 
40- AGCUACAUUGUCUGCUGGGUUUC -63
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