Mir-221-P2a4

MirGeneDB ID

Xla-Mir-221-P2a4

Family name

MIR-221 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-221

Paralogues

Xla-Mir-221-P1a3 Xla-Mir-221-P1a4 Xla-Mir-221-P2a3

Orthologues

Aca-Mir-221-P2a Ami-Mir-221-P2a Bta-Mir-221-P2a Cfa-Mir-221-P2a Cja-Mir-221-P2a Cli-Mir-221-P2a Cmi-Mir-221-P2a Cpi-Mir-221-P2a Cpo-Mir-221-P2a Dno-Mir-221-P2a Eca-Mir-221-P2a Ete-Mir-221-P2a Gga-Mir-221-P2a Gja-Mir-221-P2a Hsa-Mir-221-P2a Laf-Mir-221-P2a Lch-Mir-221-P2a Loc-Mir-221-P2a Mdo-Mir-221-P2a Mml-Mir-221-P2a Mmr-Mir-221-P2a Mmu-Mir-221-P2a Mun-Mir-221-P2a Neu-Mir-221-P2a Oan-Mir-221-P2a Ocu-Mir-221-P2a Pab-Mir-221-P2a Pbv-Mir-221-P2a Rno-Mir-221-P2a Sha-Mir-221-P2a Spt-Mir-221-P2a Sto-Mir-221-P2a Tgu-Mir-221-P2a Xtr-Mir-221-P2a

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030727.1: 44886234-44886296 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-221-P2a4)

Mir-221-P1a4 NC_030727.1: 44885774-44885835 [+] UCSC Ensembl
Mir-221-P2a4 NC_030727.1: 44886234-44886296 [+] UCSC Ensembl

Seed

GCUACAU

Precursor
(pre-Mir +30nt flank)

AAAAAGACGACAACCCAGAAUUUGGCAUGCACCUGGCAUACAAUGUAGAAAACUGUGUUUGUAAAUCAACAGCUACAUUGUCUGCUGGGUUUCAUGCUGAAUGGAAAUAAUCUUCUAUACACA

Get precursor sequence

Structure

        10          20        30         40        50        60  
AAAAAGACGACAACCCAGA--   UG     C-|  UG   U         AAAA    GUUUG 
                     AUU  GCAUG  ACC  GCA ACAAUGUAG    CUGU     U
                     UAA  CGUAC  UGG  CGU UGUUACAUC    GACA     A
ACACAUAUCUUCUAAUAAAGG   GU     UU^  GU   C         ----    ACUAA 
 120       110       100        90        80            70