Mir-221-P1a

MirGeneDB ID

Cfa-Mir-221-P1a

Family name

MIR-221 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-222

Paralogues

Cfa-Mir-221-P2a

Orthologues

Aca-Mir-221-P1a Ami-Mir-221-P1a Bta-Mir-221-P1a Cja-Mir-221-P1a1 Cja-Mir-221-P1a2 Cli-Mir-221-P1a Cmi-Mir-221-P1a Cpi-Mir-221-P1a Cpo-Mir-221-P1a Dno-Mir-221-P1a Dre-Mir-221-P1a1 Eca-Mir-221-P1a Ete-Mir-221-P1a Gga-Mir-221-P1a Gja-Mir-221-P1a Gmo-Mir-221-P1a1 Gmo-Mir-221-P1a2 Hsa-Mir-221-P1a Laf-Mir-221-P1a Lch-Mir-221-P1a Loc-Mir-221-P1a Mal-Mir-221-P1a1 Mal-Mir-221-P1a2 Mdo-Mir-221-P1a Mml-Mir-221-P1a Mmr-Mir-221-P1a Mmu-Mir-221-P1a Mun-Mir-221-P1a Neu-Mir-221-P1a Oan-Mir-221-P1a Ocu-Mir-221-P1a Pab-Mir-221-P1a Pbv-Mir-221-P1a Rno-Mir-221-P1a Sha-Mir-221-P1a Spt-Mir-221-P1a Sto-Mir-221-P1a Tgu-Mir-221-P1a Tni-Mir-221-P1a1 Xla-Mir-221-P1a3 Xla-Mir-221-P1a4 Xtr-Mir-221-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chrX: 39524537-39524600 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-221-P1a)

Mir-221-P2a chrX: 39523889-39523951 [-] UCSC Ensembl
Mir-221-P1a chrX: 39524537-39524600 [-] UCSC Ensembl

Seed

GCUACAU

Precursor
(pre-Mir +30nt flank)

GCUGCUGGAAUGUGUAUAGGUACCCUCAAUGGCUCAGUAGCCAGUGUAGAUCCUGUCUUUUGUAAUCAGUAGCUACAUCUGGCUACUGGGUCUCUGAUGGCAUCUUCUAGCUUCUGUUACAGUU

Get precursor sequence

Structure

        10          20        30        40         50        60 
GCUGCUGGAAUGUGUAU--    A  C   AU              -|    AUCCUGUCUUU 
                   AGGU CC UCA  GGCUCAGUAGCCAG UGUAG           \
                   UCUA GG AGU  CUGGGUCAUCGGUC ACAUC           U
UUGACAUUGUCUUCGAUCU    C  U   CU              U^    GAUGACUAAUG 
  120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-221-P1a_5p*

mirBase accession

None

Sequence

0- GGCUCAGUAGCCAGUGUAGAUCC -23

Get sequence

Mature sequence

Cfa-Mir-221-P1a_3p

mirBase accession

MIMAT0009851

Sequence

40- AGCUACAUCUGGCUACUGGGUCUC -64

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Proposed targets

TargetScanVert: cfa-miR-222
miRDB: MIMAT0009851