MirGeneDB 2.1

MirGeneDB ID

Sha-Mir-221-P1a

Family name MIR-221 (all species)
Seed GCUACAU
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-mir-222
Paralogues Sha-Mir-221-P2a 
Orthologues Aca-Mir-221-P1a  Ami-Mir-221-P1a  Bta-Mir-221-P1a  Cfa-Mir-221-P1a  Cli-Mir-221-P1a  Cmi-Mir-221-P1a  Cpi-Mir-221-P1a  Cpo-Mir-221-P1a  Dno-Mir-221-P1a  Dre-Mir-221-P1a1  Ete-Mir-221-P1a  Gga-Mir-221-P1a  Gja-Mir-221-P1a  Gmo-Mir-221-P1a1  Gmo-Mir-221-P1a2  Hsa-Mir-221-P1a  Lch-Mir-221-P1a  Loc-Mir-221-P1a  Mal-Mir-221-P1a1  Mal-Mir-221-P1a2  Mdo-Mir-221-P1a  Mml-Mir-221-P1a  Mmu-Mir-221-P1a  Mun-Mir-221-P1a  Oan-Mir-221-P1a  Ocu-Mir-221-P1a  Pbv-Mir-221-P1a  Rno-Mir-221-P1a  Spt-Mir-221-P1a  Sto-Mir-221-P1a  Tgu-Mir-221-P1a  Tni-Mir-221-P1a1  Xla-Mir-221-P1a3  Xla-Mir-221-P1a4  Xtr-Mir-221-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)
GL849540.1: 1793860-1793923 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-221-P1a)
Mir-221-P1a GL849540.1: 1793860-1793923 [+] UCSC Ensembl
Mir-221-P2a GL849540.1: 1794451-1794513 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGUGCCUUCUGCCUGUUUUGUCCCUCAUUCGCUCAGUAGUCAGUGUAGAUCCUGUCCCUUUCAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUGAUGGCAUCUUAGAGCUUCUCUCCCAAUC
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Structure
        10           20        30        40         50        60 
UGGUGCCUUCUGCCUGUUU---| U  C   UUC             -     AUCCUGUCCCU 
                      UG CC UCA   GCUCAGUAGUCAG UGUAG           \
                      AC GG AGU   UGGGUCAUCGGUC ACAUC           U
CUAACCCUCUCUUCGAGAUUCU^ -  U   CUC             U     GACGACUAACU 
  120       110        100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-221-P1a_5p*

mirBase accessionNone
Sequence
0- CGCUCAGUAGUCAGUGUAGAUCC -23
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Mature sequence

Sha-Mir-221-P1a_3p

mirBase accessionMIMAT0022796
Sequence
40- AGCUACAUCUGGCUACUGGGUCUC -64
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