Mir-221-P1a

MirGeneDB ID

Gga-Mir-221-P1a

Family name

MIR-221 (all species)

Seed

GCUACAU

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-222a

Paralogues

Gga-Mir-221-P1b Gga-Mir-221-P2a

Orthologues

Aca-Mir-221-P1a Ami-Mir-221-P1a Bta-Mir-221-P1a Cfa-Mir-221-P1a Cli-Mir-221-P1a Cmi-Mir-221-P1a Cpi-Mir-221-P1a Cpo-Mir-221-P1a Dno-Mir-221-P1a Dre-Mir-221-P1a1 Ete-Mir-221-P1a Gja-Mir-221-P1a Gmo-Mir-221-P1a1 Gmo-Mir-221-P1a2 Hsa-Mir-221-P1a Lch-Mir-221-P1a Loc-Mir-221-P1a Mal-Mir-221-P1a1 Mal-Mir-221-P1a2 Mdo-Mir-221-P1a Mml-Mir-221-P1a Mmu-Mir-221-P1a Mun-Mir-221-P1a Oan-Mir-221-P1a Ocu-Mir-221-P1a Pbv-Mir-221-P1a Rno-Mir-221-P1a Sha-Mir-221-P1a Spt-Mir-221-P1a Sto-Mir-221-P1a Tgu-Mir-221-P1a Tni-Mir-221-P1a1 Xla-Mir-221-P1a3 Xla-Mir-221-P1a4 Xtr-Mir-221-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

1: 111966551-111966613 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-221-P1a)

Mir-221-P1a 1: 111966551-111966613 [+] UCSC Ensembl
Mir-221-P2a 1: 111967061-111967123 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCAGCCCAGACCUUGUAGUUGCCCAUCAAUCGCUCAGUAGUCAGUGUAGAUUCUGUCUUUACAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUGAUGACAUCUCAUAUCUUCCAUCUAGACU

Get precursor sequence

Structure

        10        20          30        40         50        60
UCAGCCCAGACCUUGUAGUUGCC--     AUC             -|    AUUCUGUCUU 
                         CAUCA   GCUCAGUAGUCAG UGUAG          U
                         GUAGU   UGGGUCAUCGGUC ACAUC          A
UCAGAUCUACCUUCUAUACUCUACA     CUC             U^    GACGACUAAC 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Ch	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-221-P1a_5p*

mirBase accession

None

Sequence

0- CGCUCAGUAGUCAGUGUAGAUUC -23

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Mature sequence

Gga-Mir-221-P1a_3p

mirBase accession

None

Sequence

39- AGCUACAUCUGGCUACUGGGUCUC -63

Get sequence