MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-221-P1a

Family name MIR-221 (all species)
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-222a
Paralogues Gga-Mir-221-P1c  Gga-Mir-221-P2a 
Orthologues Aca-Mir-221-P1a  Ami-Mir-221-P1a  Bta-Mir-221-P1a  Cfa-Mir-221-P1a  Cja-Mir-221-P1a1  Cja-Mir-221-P1a2  Cli-Mir-221-P1a  Cmi-Mir-221-P1a  Cpi-Mir-221-P1a  Cpo-Mir-221-P1a  Dno-Mir-221-P1a  Dre-Mir-221-P1a1  Eca-Mir-221-P1a  Ete-Mir-221-P1a  Gja-Mir-221-P1a  Gmo-Mir-221-P1a1  Gmo-Mir-221-P1a2  Hsa-Mir-221-P1a  Laf-Mir-221-P1a  Lch-Mir-221-P1a  Loc-Mir-221-P1a  Mal-Mir-221-P1a1  Mal-Mir-221-P1a2  Mdo-Mir-221-P1a  Mml-Mir-221-P1a  Mmr-Mir-221-P1a  Mmu-Mir-221-P1a  Mun-Mir-221-P1a  Neu-Mir-221-P1a  Oan-Mir-221-P1a  Ocu-Mir-221-P1a  Pab-Mir-221-P1a  Pbv-Mir-221-P1a  Rno-Mir-221-P1a  Sha-Mir-221-P1a  Spt-Mir-221-P1a  Sto-Mir-221-P1a  Tgu-Mir-221-P1a  Tni-Mir-221-P1a1  Xla-Mir-221-P1a3  Xla-Mir-221-P1a4  Xtr-Mir-221-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 1: 111966551-111966613 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-221-P1a)		 Mir-221-P1a 1: 111966551-111966613 [+] UCSC Ensembl
Mir-221-P2a 1: 111967061-111967123 [+] UCSC Ensembl
Seed GCUACAU
Precursor
(pre-Mir +30nt flank)		 
UCAGCCCAGACCUUGUAGUUGCCCAUCAAUCGCUCAGUAGUCAGUGUAGAUUCUGUCUUUACAAUCAGCAGCUACAUCUGGCUACUGGGUCUCUGAUGACAUCUCAUAUCUUCCAUCUAGACU
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Structure
        10        20          30        40         50        60
UCAGCCCAGACCUUGUAGUUGCC--     AUC             -|    AUUCUGUCUU 
                         CAUCA   GCUCAGUAGUCAG UGUAG          U
                         GUAGU   UGGGUCAUCGGUC ACAUC          A
UCAGAUCUACCUUCUAUACUCUACA     CUC             U^    GACGACUAAC 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-221-P1a_5p*
mirBase accessionNone
Sequence 
0- CGCUCAGUAGUCAGUGUAGAUUC -23
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Mature sequence

Gga-Mir-221-P1a_3p
mirBase accessionNone
Sequence 
39- AGCUACAUCUGGCUACUGGGUCUC -63
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