Mir-148-P4

MirGeneDB ID

Cli-Mir-148-P4

Family name

MIR-148 (all species)

Seed

CAGUGCA

Species

Rock pigeon (Columba livia)

MiRBase ID

cli-mir-148b

Paralogues

Cli-Mir-148-P1 Cli-Mir-148-P1-as

Orthologues

Aca-Mir-148-P4 Ami-Mir-148-P4 Bta-Mir-148-P4 Cfa-Mir-148-P4 Cmi-Mir-148-P4 Cpi-Mir-148-P4 Cpo-Mir-148-P4 Dno-Mir-148-P4 Ebu-Mir-148 Ete-Mir-148-P4 Gga-Mir-148-P4 Gja-Mir-148-P4 Hsa-Mir-148-P4 Lch-Mir-148-P4 Loc-Mir-148-P4 Mml-Mir-148-P4 Mmu-Mir-148-P4 Mun-Mir-148-P4 Ocu-Mir-148-P4 Pbv-Mir-148-P4 Rno-Mir-148-P4 Sha-Mir-148-P4 Spt-Mir-148-P4 Tgu-Mir-148-P4 Xla-Mir-148-P4a Xla-Mir-148-P4b Xtr-Mir-148-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(colLiv2)

scaffold922: 322361-322420 [+]

Precursor
(pre-Mir +30nt flank)

GGCCCUUGGCGAGCUGGCAGCGCCCGGGGCGAGGUUCUGUCCUACACUCCGGCUGUAGCUACAGACAGUCAGUGCAUCACAGAACUUGGUCCCGGGAGCUCGGGAGCGCCCGGAUCCGCG

Get precursor sequence

Structure

        10          20        30        40        50        60
GGCCCUUGGCGAGCUGGC--|  G        G         CCUA    CC    GUAGC 
                    AGC CCCGGGGC AGGUUCUGU    CACU  GGCU     U
                    UCG GGGCCCUG UUCAAGACA    GUGA  CUGA     A
GCGCCUAGGCCCGCGAGGGC^  A        G         CUAC    --    CAGAC 
.       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Cl	Cl	Cl	Cl	Cl	To

Star sequence

Cli-Mir-148-P4_5p*

mirBase accession

None

Sequence

0- GAGGUUCUGUCCUACACUCCGGCU -24

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Mature sequence

Cli-Mir-148-P4_3p

mirBase accession

MIMAT0038544

Sequence

38- UCAGUGCAUCACAGAACUUGGU -60

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