Mir-148-P4

MirGeneDB ID

Hsa-Mir-148-P4

Family name

MIR-148 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-148b

Paralogues

Hsa-Mir-148-P1 Hsa-Mir-148-P3

Orthologues

Aca-Mir-148-P4 Ami-Mir-148-P4 Bta-Mir-148-P4 Cfa-Mir-148-P4 Cja-Mir-148-P4 Cli-Mir-148-P4 Cmi-Mir-148-P4 Cpi-Mir-148-P4 Cpo-Mir-148-P4 Dno-Mir-148-P4 Ebu-Mir-148 Eca-Mir-148-P4 Ete-Mir-148-P4 Gga-Mir-148-P4 Gja-Mir-148-P4 Laf-Mir-148-P4 Lch-Mir-148-P4 Loc-Mir-148-P4 Mml-Mir-148-P4 Mmr-Mir-148-P4 Mmu-Mir-148-P4 Mun-Mir-148-P4 Neu-Mir-148-P4 Ocu-Mir-148-P4 Pab-Mir-148-P4 Pbv-Mir-148-P4 Rno-Mir-148-P4 Sha-Mir-148-P4 Spt-Mir-148-P4 Tgu-Mir-148-P4 Xla-Mir-148-P4a Xla-Mir-148-P4b Xtr-Mir-148-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr12: 54337239-54337299 [+] UCSC Ensembl

Seed

CAGUGCA

Precursor
(pre-Mir +30nt flank)

UCAUUUCCAAGCACGAUUAGCAUUUGAGGUGAAGUUCUGUUAUACACUCAGGCUGUGGCUCUCUGAAAGUCAGUGCAUCACAGAACUUUGUCUCGAAAGCUUUCUAGCAGCUACCCAUUUU

Get precursor sequence

Structure

        10          20        30        40        50        60 
UCAUUUCCAAGCACGAUU--|  A       UG         U  A    CA    GUGGCU 
                    AGC UUUGAGG  AAGUUCUGU AU CACU  GGCU      \
                    UCG AAGCUCU  UUCAAGACA UA GUGA  CUGA      C
UUUUACCCAUCGACGAUCUU^  A       GU         C  C    --    AAGUCU 
 .       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-148-P4_5p*

mirBase accession

MIMAT0004699

Sequence

0- GAAGUUCUGUUAUACACUCAGGCU -24

Get sequence

Proposed targets

microrna.org: MIMAT0004699
TargetScanVert: hsa-miR-148b-5p
TargetMiner: hsa-miR-148b-5p
miRDB: MIMAT0004699

Mature sequence

Hsa-Mir-148-P4_3p

mirBase accession

MIMAT0000759

Sequence

39- UCAGUGCAUCACAGAACUUUGU -61

Get sequence

Proposed targets

microrna.org: MIMAT0000759
TargetScanVert: hsa-miR-148b-3p
TargetMiner: hsa-miR-148b-3p
miRDB: MIMAT0000759