Mir-148-P1

MirGeneDB ID

Hsa-Mir-148-P1

Family name

MIR-148 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-148a

Paralogues

Hsa-Mir-148-P3 Hsa-Mir-148-P4

Orthologues

Aca-Mir-148-P1 Bta-Mir-148-P1 Cfa-Mir-148-P1 Cja-Mir-148-P1 Cli-Mir-148-P1 Cli-Mir-148-P1-as Cmi-Mir-148-P1 Cpi-Mir-148-P1 Cpo-Mir-148-P1 Dno-Mir-148-P1 Ebu-Mir-148 Eca-Mir-148-P1 Ete-Mir-148-P1 Gga-Mir-148-P1 Gja-Mir-148-P1 Laf-Mir-148-P1 Lch-Mir-148-P1 Loc-Mir-148-P1 Mdo-Mir-148-P1 Mml-Mir-148-P1 Mmr-Mir-148-P1 Mmu-Mir-148-P1 Mun-Mir-148-P1 Oan-Mir-148-P1 Ocu-Mir-148-P1 Pab-Mir-148-P1 Pbv-Mir-148-P1 Pma-Mir-148-o1 Rno-Mir-148-P1 Spt-Mir-148-P1 Sto-Mir-148-P1 Tgu-Mir-148-P1 Tgu-Mir-148-P1-as Xla-Mir-148-P1a Xla-Mir-148-P1b Xtr-Mir-148-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr7: 25949922-25949981 [-] UCSC Ensembl

Seed

CAGUGCA

Precursor
(pre-Mir +30nt flank)

AGGAAGACAGCACGUUUGGUCUUUUGAGGCAAAGUUCUGAGACACUCCGACUCUGAGUAUGAUAGAAGUCAGUGCACUACAGAACUUUGUCUCUAGAGGCUGUGGUCGCCGAUGCCGCCA

Get precursor sequence

Structure

        10          20        30         40         50         
AGGAAGACAGCACGUUU--       U              -  A-|   CC    CUGAGU 
                   GGUCUUU GAGGCAAAGUUCUG AG  CACU  GACU      A
                   UCGGAGA CUCUGUUUCAAGAC UC  GUGA  CUGA      U
ACCGCCGUAGCCGCUGGUG       U              A  AC^   --    AGAUAG 
.       110       100        90        80          70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-148-P1_5p*

mirBase accession

MIMAT0004549

Sequence

0- AAAGUUCUGAGACACUCCGACU -22

Get sequence

Proposed targets

microrna.org: MIMAT0004549
TargetScanVert: hsa-miR-148a-5p
TargetMiner: hsa-miR-148a-5p
miRDB: MIMAT0004549

Mature sequence

Hsa-Mir-148-P1_3p

mirBase accession

MIMAT0000243

Sequence

38- UCAGUGCACUACAGAACUUUGU -60

Get sequence

Proposed targets

microrna.org: MIMAT0000243
TargetScanVert: hsa-miR-148a-3p
TargetMiner: hsa-miR-148a-3p
miRDB: MIMAT0000243