Mir-148-P1

MirGeneDB ID

Gja-Mir-148-P1

Family name

MIR-148 (all species)

Seed

CAGUGCA

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-148-P4

Orthologues

Aca-Mir-148-P1 Bta-Mir-148-P1 Cfa-Mir-148-P1 Cli-Mir-148-P1 Cli-Mir-148-P1-as Cmi-Mir-148-P1 Cpi-Mir-148-P1 Cpo-Mir-148-P1 Dno-Mir-148-P1 Ebu-Mir-148 Ete-Mir-148-P1 Gga-Mir-148-P1 Hsa-Mir-148-P1 Lch-Mir-148-P1 Loc-Mir-148-P1 Mdo-Mir-148-P1 Mml-Mir-148-P1 Mmu-Mir-148-P1 Mun-Mir-148-P1 Oan-Mir-148-P1 Ocu-Mir-148-P1 Pbv-Mir-148-P1 Pma-Mir-148-o1 Rno-Mir-148-P1 Spt-Mir-148-P1 Sto-Mir-148-P1 Tgu-Mir-148-P1 Tgu-Mir-148-P1-as Xla-Mir-148-P1a Xla-Mir-148-P1b Xtr-Mir-148-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015170898.1: 349164-349223 [-]

Precursor
(pre-Mir +30nt flank)

GGAAAAAAAGAAGAUUUGGUCUUUGGAAGCAAAGUUCUGUGACACUCAGACUCUGAUUAUGAUAGAAGUCAGUGCACUACAGAACUUUGUCUCCAGGGACUGCAGCAGCCAAGGAGUUAA

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Structure

        10          20        30        40          50         
GGAAAAAAAGAAGAUUU--          AG            A--|   CA    CUGAUU 
                   GGUCUUUGGA  CAAAGUUCUGUG   CACU  GACU      A
                   UCAGGGACCU  GUUUCAAGACAU   GUGA  CUGA      U
AAUUGAGGAACCGACGACG          CU            CAC^   --    AGAUAG 
.       110       100        90        80          70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Gja-Mir-148-P1_5p*

mirBase accession

None

Sequence

0- AAAGUUCUGUGACACUCAGACU -22

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Mature sequence

Gja-Mir-148-P1_3p

mirBase accession

None

Sequence

38- UCAGUGCACUACAGAACUUUGU -60

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