MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-148-P1-as

Family name MIR-148 (all species)
Species Rock pigeon (Columba livia)
MiRBase ID
Paralogues Cli-Mir-148-P1  Cli-Mir-148-P4 
Orthologues Aca-Mir-148-P1  Bta-Mir-148-P1  Cfa-Mir-148-P1  Cja-Mir-148-P1  Cmi-Mir-148-P1  Cpi-Mir-148-P1  Cpo-Mir-148-P1  Dno-Mir-148-P1  Ebu-Mir-148  Eca-Mir-148-P1  Ete-Mir-148-P1  Gga-Mir-148-P1  Gja-Mir-148-P1  Hsa-Mir-148-P1  Laf-Mir-148-P1  Lch-Mir-148-P1  Loc-Mir-148-P1  Mdo-Mir-148-P1  Mml-Mir-148-P1  Mmr-Mir-148-P1  Mmu-Mir-148-P1  Mun-Mir-148-P1  Oan-Mir-148-P1  Ocu-Mir-148-P1  Pab-Mir-148-P1  Pbv-Mir-148-P1  Pma-Mir-148-o1  Rno-Mir-148-P1  Spt-Mir-148-P1  Sto-Mir-148-P1  Tgu-Mir-148-P1  Tgu-Mir-148-P1-as  Xla-Mir-148-P1a  Xla-Mir-148-P1b  Xtr-Mir-148-P1 
Node of Origin (locus) Neoaves
Node of Origin (family) Vertebrata
Genome context
(colLiv2)		 scaffold699: 533827-533886 [+]
Clustered miRNAs
(< 50kb from Mir-148-P1-as)		 Mir-148-P1 scaffold699: 533825-533884 [-]
Mir-148-P1-as scaffold699: 533827-533886 [+]
Seed AAGUUCU
Precursor
(pre-Mir +30nt flank)		 
CCUCCCGGGGCCGCCGCCGCCGCCGGAGACAAAGUUCUGUAGUGCACUGACUGCUAUCGUACCCAGAGUCGGAGUGUCACAGAACUUUGCUUCCGGAGGCUCCAGUCCUCCUCCGGUACC
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Structure
        10          20        30        40        50         
CCUCCCGGGGCCGCCGCC--|  G     GA           AG   A      GCUAUC 
                    GCC CCGGA  CAAAGUUCUGU  UGC CUGACU      G
                    CGG GGCCU  GUUUCAAGACA  GUG GGCUGA      U
CCAUGGCCUCCUCCUGACCU^  A     UC           CU   A      GACCCA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-148-P1-as_5p
mirBase accessionNone
Sequence 
0- AAAGUUCUGUAGUGCACUGACU -22
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Star sequence

Cli-Mir-148-P1-as_3p*
mirBase accessionNone
Sequence 
38- UCGGAGUGUCACAGAACUUUGC -60
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