MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-148-P1

Family name MIR-148 (all species)
Seed CAGUGCA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-148a
Paralogues Rno-Mir-148-P3  Rno-Mir-148-P4 
Orthologues Aca-Mir-148-P1  Bta-Mir-148-P1  Cfa-Mir-148-P1  Cli-Mir-148-P1  Cli-Mir-148-P1-as  Cmi-Mir-148-P1  Cpi-Mir-148-P1  Cpo-Mir-148-P1  Dno-Mir-148-P1  Ebu-Mir-148  Ete-Mir-148-P1  Gga-Mir-148-P1  Gja-Mir-148-P1  Hsa-Mir-148-P1  Lch-Mir-148-P1  Loc-Mir-148-P1  Mdo-Mir-148-P1  Mml-Mir-148-P1  Mmu-Mir-148-P1  Mun-Mir-148-P1  Oan-Mir-148-P1  Ocu-Mir-148-P1  Pbv-Mir-148-P1  Pma-Mir-148-o1  Spt-Mir-148-P1  Sto-Mir-148-P1  Tgu-Mir-148-P1  Tgu-Mir-148-P1-as  Xla-Mir-148-P1a  Xla-Mir-148-P1b  Xtr-Mir-148-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)
chr4: 81013284-81013343 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGAAGACAGCCAGUUUGGUCUUUUGAGACAAAGUUCUGAGACACUCUGACUCUGAGUAUGAUAGAAGUCAGUGCACUACAGAACUUUGUCUCUAGAGGCUGUGGACGUCGCCUCCCAGC
Get precursor sequence
Structure
        10          20        30         40        50         
AGGAAGACAGCCAGUUU--       U              -| ACACU      CUGAGU 
                   GGUCUUU GAGACAAAGUUCUG AG     CUGACU      A
                   UCGGAGA CUCUGUUUCAAGAC UC     GACUGA      U
CGACCCUCCGCUGCAGGUG       U              A^ ACGU-      AGAUAG 
.       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-148-P1_5p*

mirBase accessionMIMAT0035724
Sequence
0- AAAGUUCUGAGACACUCUGACU -22
Get sequence
Proposed targets TargetScanVert: rno-miR-148a-5p
miRDB: MIMAT0035724
Mature sequence

Rno-Mir-148-P1_3p

mirBase accessionMIMAT0035725
Sequence
38- UCAGUGCACUACAGAACUUUGU -60
Get sequence
Proposed targets TargetScanVert: rno-miR-148a-3p
miRDB: MIMAT0035725