Mir-148-P1

MirGeneDB ID

Rno-Mir-148-P1

Family name

MIR-148 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-148a

Paralogues

Rno-Mir-148-P3 Rno-Mir-148-P4

Orthologues

Aca-Mir-148-P1 Bta-Mir-148-P1 Cfa-Mir-148-P1 Cja-Mir-148-P1 Cli-Mir-148-P1 Cli-Mir-148-P1-as Cmi-Mir-148-P1 Cpi-Mir-148-P1 Cpo-Mir-148-P1 Dno-Mir-148-P1 Ebu-Mir-148 Eca-Mir-148-P1 Ete-Mir-148-P1 Gga-Mir-148-P1 Gja-Mir-148-P1 Hsa-Mir-148-P1 Laf-Mir-148-P1 Lch-Mir-148-P1 Loc-Mir-148-P1 Mdo-Mir-148-P1 Mml-Mir-148-P1 Mmr-Mir-148-P1 Mmu-Mir-148-P1 Mun-Mir-148-P1 Oan-Mir-148-P1 Ocu-Mir-148-P1 Pab-Mir-148-P1 Pbv-Mir-148-P1 Pma-Mir-148-o1 Spt-Mir-148-P1 Sto-Mir-148-P1 Tgu-Mir-148-P1 Tgu-Mir-148-P1-as Xla-Mir-148-P1a Xla-Mir-148-P1b Xtr-Mir-148-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr4: 81013284-81013343 [-] UCSC Ensembl

Seed

CAGUGCA

Precursor
(pre-Mir +30nt flank)

AGGAAGACAGCCAGUUUGGUCUUUUGAGACAAAGUUCUGAGACACUCUGACUCUGAGUAUGAUAGAAGUCAGUGCACUACAGAACUUUGUCUCUAGAGGCUGUGGACGUCGCCUCCCAGC

Get precursor sequence

Structure

        10          20        30         40        50         
AGGAAGACAGCCAGUUU--       U              -| ACACU      CUGAGU 
                   GGUCUUU GAGACAAAGUUCUG AG     CUGACU      A
                   UCGGAGA CUCUGUUUCAAGAC UC     GACUGA      U
CGACCCUCCGCUGCAGGUG       U              A^ ACGU-      AGAUAG 
.       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-148-P1_5p*

mirBase accession

MIMAT0035724

Sequence

0- AAAGUUCUGAGACACUCUGACU -22

Get sequence

Proposed targets

TargetScanVert: rno-miR-148a-5p
miRDB: MIMAT0035724

Mature sequence

Rno-Mir-148-P1_3p

mirBase accession

MIMAT0035725

Sequence

38- UCAGUGCACUACAGAACUUUGU -60

Get sequence

Proposed targets

TargetScanVert: rno-miR-148a-3p
miRDB: MIMAT0035725