Mir-148-P1

MirGeneDB ID

Mmu-Mir-148-P1

Family name

MIR-148 (all species)

Seed

CAGUGCA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-148a

Paralogues

Mmu-Mir-148-P3 Mmu-Mir-148-P4

Orthologues

Aca-Mir-148-P1 Bta-Mir-148-P1 Cfa-Mir-148-P1 Cli-Mir-148-P1 Cli-Mir-148-P1-as Cmi-Mir-148-P1 Cpi-Mir-148-P1 Cpo-Mir-148-P1 Dno-Mir-148-P1 Ebu-Mir-148 Ete-Mir-148-P1 Gga-Mir-148-P1 Gja-Mir-148-P1 Hsa-Mir-148-P1 Lch-Mir-148-P1 Loc-Mir-148-P1 Mdo-Mir-148-P1 Mml-Mir-148-P1 Mun-Mir-148-P1 Oan-Mir-148-P1 Ocu-Mir-148-P1 Pbv-Mir-148-P1 Pma-Mir-148-o1 Rno-Mir-148-P1 Spt-Mir-148-P1 Sto-Mir-148-P1 Tgu-Mir-148-P1 Tgu-Mir-148-P1-as Xla-Mir-148-P1a Xla-Mir-148-P1b Xtr-Mir-148-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr6: 51269829-51269888 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGAAGACAGCCAGUUUGGUCUUUUGAGACAAAGUUCUGAGACACUCCGACUCUGAGUAUGAUAGAAGUCAGUGCACUACAGAACUUUGUCUCUAGAGGCUGUGGUCGCCGCCUCCCCGC

Get precursor sequence

Structure

        10          20        30         40         50         
AGGAAGACAGCCAGUUU--       U              -  A-|   CC    CUGAGU 
                   GGUCUUU GAGACAAAGUUCUG AG  CACU  GACU      A
                   UCGGAGA CUCUGUUUCAAGAC UC  GUGA  CUGA      U
CGCCCCUCCGCCGCUGGUG       U              A  AC^   --    AGAUAG 
.       110       100        90        80          70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Ce	Em	Em	He	In	Ki	Li	Lu	Mu	Ov	Pa	Sk	Sp	Sp	Te

Star sequence

Mmu-Mir-148-P1_5p*

mirBase accession

MIMAT0004617

Sequence

0- AAAGUUCUGAGACACUCCGACU -22

Get sequence

Proposed targets

microrna.org: MIMAT0004617
TargetScanVert: mmu-miR-148a-5p
miRDB: MIMAT0004617

Mature sequence

Mmu-Mir-148-P1_3p

mirBase accession

MIMAT0000516

Sequence

38- UCAGUGCACUACAGAACUUUGU -60

Get sequence

Proposed targets

microrna.org: MIMAT0000516
TargetScanVert: mmu-miR-148a-3p
miRDB: MIMAT0000516