MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-148-P1b

Family name MIR-148 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-148-P1a  Xla-Mir-148-P4a  Xla-Mir-148-P4b 
Orthologues Aca-Mir-148-P1  Bta-Mir-148-P1  Cfa-Mir-148-P1  Cja-Mir-148-P1  Cli-Mir-148-P1  Cli-Mir-148-P1-as  Cmi-Mir-148-P1  Cpi-Mir-148-P1  Cpo-Mir-148-P1  Dno-Mir-148-P1  Ebu-Mir-148  Eca-Mir-148-P1  Ete-Mir-148-P1  Gga-Mir-148-P1  Gja-Mir-148-P1  Hsa-Mir-148-P1  Laf-Mir-148-P1  Lch-Mir-148-P1  Loc-Mir-148-P1  Mdo-Mir-148-P1  Mml-Mir-148-P1  Mmr-Mir-148-P1  Mmu-Mir-148-P1  Mun-Mir-148-P1  Oan-Mir-148-P1  Ocu-Mir-148-P1  Pab-Mir-148-P1  Pbv-Mir-148-P1  Pma-Mir-148-o1  Rno-Mir-148-P1  Spt-Mir-148-P1  Sto-Mir-148-P1  Tgu-Mir-148-P1  Tgu-Mir-148-P1-as  Xtr-Mir-148-P1 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030735.1: 33079270-33079329 [-] UCSC Ensembl
Seed CAGUGCA
Precursor
(pre-Mir +30nt flank)		 
ACCUUCCAUGUCUUACUAGUCUUUUAAAUCAAAGUUCUGUGACACUUAGACUCUGAAUAUGAAAGCAGUCAGUGCACUACAGAACUUUGUUUUGGGAGUCUGCAGCUUCUUCCCCGAGUG
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Structure
        10          20        30        40          50         
ACCUUCCAUGUCUUACU--  U        U            A--|   UA    CUGAAU 
                   AG CUUUUAAA CAAAGUUCUGUG   CACU  GACU      A
                   UC GAGGGUUU GUUUCAAGACAU   GUGA  CUGA      U
GUGAGCCCCUUCUUCGACG  U        U            CAC^   --    CGAAAG 
.       110       100        90        80          70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Eg Em Em He Ki Re St St
Star sequence

Xla-Mir-148-P1b_5p*
mirBase accessionNone
Sequence 
0- AAAGUUCUGUGACACUUAGACU -22
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Mature sequence

Xla-Mir-148-P1b_3p
mirBase accessionNone
Sequence 
38- UCAGUGCACUACAGAACUUUGU -60
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