Mir-148-P1

MirGeneDB ID

Cpi-Mir-148-P1

Family name

MIR-148 (all species)

Species

Western painted turtle (Chrysemys picta bellii)

MiRBase ID

cpi-mir-148a

Paralogues

Cpi-Mir-148-P3 Cpi-Mir-148-P4

Orthologues

Aca-Mir-148-P1 Bta-Mir-148-P1 Cfa-Mir-148-P1 Cja-Mir-148-P1 Cli-Mir-148-P1 Cli-Mir-148-P1-as Cmi-Mir-148-P1 Cpo-Mir-148-P1 Dno-Mir-148-P1 Ebu-Mir-148 Eca-Mir-148-P1 Ete-Mir-148-P1 Gga-Mir-148-P1 Gja-Mir-148-P1 Hsa-Mir-148-P1 Laf-Mir-148-P1 Lch-Mir-148-P1 Loc-Mir-148-P1 Mdo-Mir-148-P1 Mml-Mir-148-P1 Mmr-Mir-148-P1 Mmu-Mir-148-P1 Mun-Mir-148-P1 Oan-Mir-148-P1 Ocu-Mir-148-P1 Pab-Mir-148-P1 Pbv-Mir-148-P1 Pma-Mir-148-o1 Rno-Mir-148-P1 Spt-Mir-148-P1 Sto-Mir-148-P1 Tgu-Mir-148-P1 Tgu-Mir-148-P1-as Xla-Mir-148-P1a Xla-Mir-148-P1b Xtr-Mir-148-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(chrPic1)

JH584577: 4008202-4008261 [-] UCSC Ensembl

Seed

CAGUGCA

Precursor
(pre-Mir +30nt flank)

GUACCUCGGGAGGAUUUAGUCUCUUGAAGCAAAGUUCUGUGACACUCAGACUCUGAUUAUGAUAGAAGUCAGUGCACUACAGAACUUUGUCUUUGGGGGCUGUAGCAGCGAAGGGGUUAA

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Structure

        10          20         30        40          50         
GUACCUCGGGAGGAUUU--    U  UG   -            A--|   CA    CUGAUU 
                   AGUC CU  AAG CAAAGUUCUGUG   CACU  GACU      A
                   UCGG GG  UUC GUUUCAAGACAU   GUGA  CUGA      U
AAUUGGGGAAGCGACGAUG    -  GU   U            CAC^   --    AGAUAG 
.       110       100         90        80          70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Te	Te	Te	To

Star sequence

Cpi-Mir-148-P1_5p*

mirBase accession

MIMAT0037782

Sequence

0- AAAGUUCUGUGACACUCAGACU -22

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Mature sequence

Cpi-Mir-148-P1_3p

mirBase accession

MIMAT0037783

Sequence

38- UCAGUGCACUACAGAACUUUGU -60

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