Mir-148-P3

MirGeneDB ID

Cpi-Mir-148-P3

Family name

MIR-148 (all species)

Species

Western painted turtle (Chrysemys picta bellii)

MiRBase ID

cpi-mir-152

Paralogues

Cpi-Mir-148-P1 Cpi-Mir-148-P4

Orthologues

Ami-Mir-148-P3 Bta-Mir-148-P3 Cfa-Mir-148-P3 Cja-Mir-148-P3 Cmi-Mir-148-P3 Cpo-Mir-148-P3 Dno-Mir-148-P3 Dre-Mir-148-P3 Ebu-Mir-148 Eca-Mir-148-P3 Gmo-Mir-148-P3 Hsa-Mir-148-P3 Laf-Mir-148-P3 Loc-Mir-148-P3 Mal-Mir-148-P3 Mdo-Mir-148-P3 Mml-Mir-148-P3 Mmr-Mir-148-P3 Mmu-Mir-148-P3 Neu-Mir-148-P3 Oan-Mir-148-P3 Ocu-Mir-148-P3 Pab-Mir-148-P3 Rno-Mir-148-P3 Sha-Mir-148-P3 Spt-Mir-148-P3 Sto-Mir-148-P3 Tni-Mir-148-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(chrPic1)

JH584731: 1980029-1980087 [-] UCSC Ensembl

Seed

CAGUGCA

Precursor
(pre-Mir +30nt flank)

GUGCCAGGCCCAUCUCAGUCCUCUCGGCCCAGGUUCUGUGGUACACUUGGACUUGGACUCUGGAGCAGUCAGUGCAUGACAGAACUUGGGUUUGGAUGGACCCUUUCGCAGACCACCCC

Get precursor sequence

Structure

        10         20         30        40        50          
GUGCCAGGCCCAUCUCA-    -|  CG             G  A    UG    UGGACU 
                  GUCC UCU  GCCCAGGUUCUGU GU CACU  GACU      \
                  CAGG AGG  UGGGUUCAAGACA UA GUGA  CUGA      C
CCCCACCAGACGCUUUCC    U^  UU             G  C    --    CGAGGU 
       110       100        90        80          70