MirGeneDB ID | Mdo-Mir-148-P3 |
Family name |
MIR-148 (all species) |
Species |
Gray short-tailed opossum (Monodelphis domestica) |
MiRBase ID |
mdo-mir-152
|
Paralogues |
Mdo-Mir-148-P1
|
Orthologues |
Ami-Mir-148-P3
Bta-Mir-148-P3
Cfa-Mir-148-P3
Cja-Mir-148-P3
Cmi-Mir-148-P3
Cpi-Mir-148-P3
Cpo-Mir-148-P3
Dno-Mir-148-P3
Dre-Mir-148-P3
Ebu-Mir-148
Eca-Mir-148-P3
Gmo-Mir-148-P3
Hsa-Mir-148-P3
Laf-Mir-148-P3
Loc-Mir-148-P3
Mal-Mir-148-P3
Mml-Mir-148-P3
Mmr-Mir-148-P3
Mmu-Mir-148-P3
Neu-Mir-148-P3
Oan-Mir-148-P3
Ocu-Mir-148-P3
Pab-Mir-148-P3
Rno-Mir-148-P3
Sha-Mir-148-P3
Spt-Mir-148-P3
Sto-Mir-148-P3
Tni-Mir-148-P3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (monDom5_add) |
2: 200362987-200363045 [-]
UCSC
Ensembl
|
Seed |
CAGUGCA |
Precursor (pre-Mir +30nt flank) |
GCAAAGGACCCCUGUCAGUCUCCCCGGCCCAGGUUCUGUGAUACACUCCGACUUAGACUCUGGAGCAGUCAGUGCAUGACAGAACUUGGGCUUGGGUGGACCUUCUGCACGGAGAGGGG
Get precursor sequence
|
Structure | 10 20 30 40 50
GCAAAGGACCCCUGUCA- UC -| G A CC UAGACU
GUC CCC GGCCCAGGUUCUGU AU CACU GACU \
CAG GGG UCGGGUUCAAGACA UA GUGA CUGA C
GGGGAGAGGCACGUCUUC GU U^ G C -- CGAGGU
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Mdo-Mir-148-P3_5p* |
mirBase accession | MIMAT0026671 |
Sequence |
0- AGGUUCUGUGAUACACUCCGACU -23
Get sequence
|
Proposed targets |
TargetScanVert: mdo-miR-152-5p
|
Mature sequence |
Mdo-Mir-148-P3_3p |
mirBase accession | MIMAT0004117 |
Sequence |
38- UCAGUGCAUGACAGAACUUGG -59
Get sequence
|
Proposed targets |
TargetScanVert: mdo-miR-152-3p
|