Mir-148-P3

MirGeneDB ID

Mal-Mir-148-P3

Family name

MIR-148 (all species)

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-148-P2

Orthologues

Ami-Mir-148-P3 Bta-Mir-148-P3 Cfa-Mir-148-P3 Cja-Mir-148-P3 Cmi-Mir-148-P3 Cpi-Mir-148-P3 Cpo-Mir-148-P3 Dno-Mir-148-P3 Dre-Mir-148-P3 Ebu-Mir-148 Eca-Mir-148-P3 Gmo-Mir-148-P3 Hsa-Mir-148-P3 Laf-Mir-148-P3 Loc-Mir-148-P3 Mdo-Mir-148-P3 Mml-Mir-148-P3 Mmr-Mir-148-P3 Mmu-Mir-148-P3 Neu-Mir-148-P3 Oan-Mir-148-P3 Ocu-Mir-148-P3 Pab-Mir-148-P3 Rno-Mir-148-P3 Sha-Mir-148-P3 Spt-Mir-148-P3 Sto-Mir-148-P3 Tni-Mir-148-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884780.1: 550961-551019 [+] UCSC Ensembl

Seed

AGUUCUG

Precursor
(pre-Mir +30nt flank)

UAAACAUUUUGGAUUGCAAGCUCCUGGUCUAAGUUCUGUGAUACACUCUGACUGUGAAUCUAUGCUAGUCAGUGCAUAACAGAACUUUGUCCCGGGUCUGAAAGCUCUUCGCAAGGACG

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Structure

        10          20        30         40        50          
UAAACAUUUUGGAUUGCA--| CU     UCU-         G  A    CU    GUGAAU 
                    AG  CCUGG    AAGUUCUGU AU CACU  GACU      \
                    UC  GGGCC    UUCAAGACA UA GUGA  CUGA      C
GCAGGAACGCUUCUCGAAAG^ U-     CUGU         A  C    --    UCGUAU 
       110       100         90        80          70

Deep sequencing

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Comment

The highest read count is monoadenylated at the 3' end of the 3p arm.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-148-P3_5p

mirBase accession

None

Sequence

0- AAGUUCUGUGAUACACUCUGACU -23

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Co-mature sequence

Mal-Mir-148-P3_3p

mirBase accession

None

Sequence

38- UCAGUGCAUAACAGAACUUUG -59

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