Mir-148-P3

MirGeneDB ID

Sha-Mir-148-P3

Family name

MIR-148 (all species)

Seed

CAGUGCA

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-148-P4

Orthologues

Ami-Mir-148-P3 Bta-Mir-148-P3 Cfa-Mir-148-P3 Cmi-Mir-148-P3 Cpi-Mir-148-P3 Cpo-Mir-148-P3 Dno-Mir-148-P3 Dre-Mir-148-P3 Ebu-Mir-148 Gmo-Mir-148-P3 Hsa-Mir-148-P3 Loc-Mir-148-P3 Mal-Mir-148-P3 Mdo-Mir-148-P3 Mml-Mir-148-P3 Mmu-Mir-148-P3 Oan-Mir-148-P3 Ocu-Mir-148-P3 Rno-Mir-148-P3 Spt-Mir-148-P3 Sto-Mir-148-P3 Tni-Mir-148-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL856828.1: 332404-332462 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAAAGGACCCCCAUCAGUCUCCCCGACCCAGGUUCUGUGAUACACUCUGACUUAGACUCUGGAGCAGUCAGUGCAUGACAGAACUUGGGUUUGGGUGGACCUUCUGCACGGAAAAGGA

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Structure

        10         20         30        40        50          
GAAAAGGACCCCCAUCA-   UC   -|             G  A    CU    UAGACU 
                  GUC  CCC GACCCAGGUUCUGU AU CACU  GACU      \
                  CAG  GGG UUGGGUUCAAGACA UA GUGA  CUGA      C
AGGAAAAGGCACGUCUUC   GU   U^             G  C    --    CGAGGU 
       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Star sequence

Sha-Mir-148-P3_5p*

mirBase accession

None

Sequence

0- AGGUUCUGUGAUACACUCUGACU -23

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Mature sequence

Sha-Mir-148-P3_3p

mirBase accession

None

Sequence

38- UCAGUGCAUGACAGAACUUGG -59

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