MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-148-P3

Family name MIR-148 (all species)
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-152
Paralogues Gmo-Mir-148-P2 
Orthologues Ami-Mir-148-P3  Bta-Mir-148-P3  Cfa-Mir-148-P3  Cja-Mir-148-P3  Cmi-Mir-148-P3  Cpi-Mir-148-P3  Cpo-Mir-148-P3  Dno-Mir-148-P3  Dre-Mir-148-P3  Ebu-Mir-148  Eca-Mir-148-P3  Hsa-Mir-148-P3  Laf-Mir-148-P3  Loc-Mir-148-P3  Mal-Mir-148-P3  Mdo-Mir-148-P3  Mml-Mir-148-P3  Mmr-Mir-148-P3  Mmu-Mir-148-P3  Neu-Mir-148-P3  Oan-Mir-148-P3  Ocu-Mir-148-P3  Pab-Mir-148-P3  Rno-Mir-148-P3  Sha-Mir-148-P3  Spt-Mir-148-P3  Sto-Mir-148-P3  Tni-Mir-148-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 contig24317: 803-861 [-] UCSC Ensembl
Seed CAGUGCA
Precursor
(pre-Mir +30nt flank)		 
CAUUGUUGUGAAGUUGUGAGUACCUGGUCCAAGUUCUGUGAUACACUCGGACUGUGAAUCUAUGCUAGUCAGUGCAUAACAGAACUUUGGCCCGCUGGCUCCUGGACAGCACAGAGUCG
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Structure
        10         20         30        40        50          
CAUUGUUGUGAAGUUGU-    ACCU-|   C         G  A    CG    GUGAAU 
                  GAGU     GGUC AAGUUCUGU AU CACU  GACU      \
                  CUCG     CCGG UUCAAGACA UA GUGA  CUGA      C
GCUGAGACACGACAGGUC    GUCGC^   U         A  C    --    UCGUAU 
       110       100        90        80          70
Deep sequencing
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CommentThe highest read count is monoadenylated at the 3' end of the 3p arm.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-148-P3_5p*
mirBase accessionMIMAT0044018
Sequence 
0- AAGUUCUGUGAUACACUCGGACU -23
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Mature sequence

Gmo-Mir-148-P3_3p
mirBase accessionMIMAT0044019
Sequence 
38- UCAGUGCAUAACAGAACUUUG -59
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