Mir-148-P3

MirGeneDB ID

Rno-Mir-148-P3

Family name

MIR-148 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-152

Paralogues

Rno-Mir-148-P1 Rno-Mir-148-P4

Orthologues

Ami-Mir-148-P3 Bta-Mir-148-P3 Cfa-Mir-148-P3 Cja-Mir-148-P3 Cmi-Mir-148-P3 Cpi-Mir-148-P3 Cpo-Mir-148-P3 Dno-Mir-148-P3 Dre-Mir-148-P3 Ebu-Mir-148 Eca-Mir-148-P3 Gmo-Mir-148-P3 Hsa-Mir-148-P3 Laf-Mir-148-P3 Loc-Mir-148-P3 Mal-Mir-148-P3 Mdo-Mir-148-P3 Mml-Mir-148-P3 Mmr-Mir-148-P3 Mmu-Mir-148-P3 Neu-Mir-148-P3 Oan-Mir-148-P3 Ocu-Mir-148-P3 Pab-Mir-148-P3 Sha-Mir-148-P3 Spt-Mir-148-P3 Sto-Mir-148-P3 Tni-Mir-148-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr10: 84719332-84719392 [+] UCSC Ensembl

Seed

CAGUGCA

Precursor
(pre-Mir +30nt flank)

AGGAGGCUCGGCGCCGCUGUUCCCCGGGCCCAGGUUCUGUGAUACACUCCGACUCGGGCUCUGGAGCAGUCAGUGCAUGACAGAACUUGGGCCCGGUAGGACUUUCUGCACCCAGCGGACU

Get precursor sequence

Structure

        10         20         30        40        50        60 
AGGAGGCUCGGCGCCGCU-    C-|                G  A    CC    CGGGCU 
                   GUUC  CCGGGCCCAGGUUCUGU AU CACU  GACU      \
                   CAGG  GGCCCGGGUUCAAGACA UA GUGA  CUGA      C
UCAGGCGACCCACGUCUUU    AU^                G  C    --    CGAGGU 
 .       110       100        90        80          70

Deep sequencing

Go to detailed chart

Comment

There is a second Drosha cut +1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-148-P3_5p*

mirBase accession

MIMAT0017134

Sequence

0- CAGGUUCUGUGAUACACUCCGACU -24

Get sequence

Proposed targets

TargetScanVert: rno-miR-152-5p
miRDB: MIMAT0017134

Mature sequence

Rno-Mir-148-P3_3p

mirBase accession

MIMAT0000854

Sequence

39- UCAGUGCAUGACAGAACUUGGG -61

Get sequence

Proposed targets

microrna.org: MIMAT0000854
TargetScanVert: rno-miR-152-3p
miRDB: MIMAT0000854