MirGeneDB ID | Ocu-Mir-148-P3 |
Family name |
MIR-148 (all species) |
Seed |
CAGUGCA |
Species |
Rabbit (Oryctolagus cuniculus) |
MiRBase ID |
ocu-mir-152
|
Paralogues |
Ocu-Mir-148-P1
Ocu-Mir-148-P4
|
Orthologues |
Ami-Mir-148-P3
Bta-Mir-148-P3
Cfa-Mir-148-P3
Cmi-Mir-148-P3
Cpi-Mir-148-P3
Cpo-Mir-148-P3
Dno-Mir-148-P3
Dre-Mir-148-P3
Ebu-Mir-148
Gmo-Mir-148-P3
Hsa-Mir-148-P3
Loc-Mir-148-P3
Mal-Mir-148-P3
Mdo-Mir-148-P3
Mml-Mir-148-P3
Mmu-Mir-148-P3
Oan-Mir-148-P3
Rno-Mir-148-P3
Sha-Mir-148-P3
Spt-Mir-148-P3
Sto-Mir-148-P3
Tni-Mir-148-P3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Vertebrata
|
Genome context (oryCun2_add) |
chr19: 39313272-39313330 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAGGCUCUCGGCGCCGCUGUCCCCCGGCCCAGGUUCUGUGAUACACUCCGACUCGGGCUCUGGAGCAGUCAGUGCAUGACAGAACUUGGGCCCGGAAGGACCUUCUGCACCCAGCGGGC
Get precursor sequence
|
Structure | 10 20 30 40 50
CAGGCUCUCGGCGCCGCU --| C G A CC CGGGCU
GUCC CC GGCCCAGGUUCUGU AU CACU GACU \
CAGG GG CCGGGUUCAAGACA UA GUGA CUGA C
CGGGCGACCCACGUCUUC AA^ C G C -- CGAGGU
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ocu-Mir-148-P3_5p* |
mirBase accession | MIMAT0048267 |
Sequence |
0- AGGUUCUGUGAUACACUCCGACU -23
Get sequence
|
Mature sequence |
Ocu-Mir-148-P3_3p |
mirBase accession | MIMAT0048268 |
Sequence |
38- UCAGUGCAUGACAGAACUUGG -59
Get sequence
|