Mir-148-P3

MirGeneDB ID

Bta-Mir-148-P3

Family name

MIR-148 (all species)

Seed

CAGUGCA

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-152

Paralogues

Bta-Mir-148-P1 Bta-Mir-148-P4

Orthologues

Ami-Mir-148-P3 Cfa-Mir-148-P3 Cmi-Mir-148-P3 Cpi-Mir-148-P3 Cpo-Mir-148-P3 Dno-Mir-148-P3 Dre-Mir-148-P3 Ebu-Mir-148 Gmo-Mir-148-P3 Hsa-Mir-148-P3 Loc-Mir-148-P3 Mal-Mir-148-P3 Mdo-Mir-148-P3 Mml-Mir-148-P3 Mmu-Mir-148-P3 Oan-Mir-148-P3 Ocu-Mir-148-P3 Rno-Mir-148-P3 Sha-Mir-148-P3 Spt-Mir-148-P3 Sto-Mir-148-P3 Tni-Mir-148-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037346.1: 38444489-38444547 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGAGCUCGGCGCCGCUGUCCUCCCGGCCCAGGUUCUGUGAUACACUCCGACUCGGGCUCUGGAGCAGUCAGUGCAUGACAGAACUUGGGCCCGGACGGACCUUCUGCACCCAAUGGGC

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Structure

        10         20         30        40        50          
AGGAGCUCGGCGCCGCU-    -|  C              G  A    CC    CGGGCU 
                  GUCC UCC GGCCCAGGUUCUGU AU CACU  GACU      \
                  CAGG AGG CCGGGUUCAAGACA UA GUGA  CUGA      C
CGGGUAACCCACGUCUUC    C^  C              G  C    --    CGAGGU 
       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Cd	Fe	Bo	Br	Ce	Co	Co	De	He	Hy	Ir	Ki	La	Lo	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-148-P3_5p*

mirBase accession

None

Sequence

0- AGGUUCUGUGAUACACUCCGACU -23

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Mature sequence

Bta-Mir-148-P3_3p

mirBase accession

MIMAT0009238

Sequence

38- UCAGUGCAUGACAGAACUUGG -59

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Proposed targets

TargetScanVert: bta-miR-152