Mir-148-P3

MirGeneDB ID

Cmi-Mir-148-P3

Family name

MIR-148 (all species)

Seed

CAGUGCA

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-148-P1 Cmi-Mir-148-P2 Cmi-Mir-148-P4

Orthologues

Ami-Mir-148-P3 Bta-Mir-148-P3 Cfa-Mir-148-P3 Cpi-Mir-148-P3 Cpo-Mir-148-P3 Dno-Mir-148-P3 Dre-Mir-148-P3 Ebu-Mir-148 Gmo-Mir-148-P3 Hsa-Mir-148-P3 Loc-Mir-148-P3 Mal-Mir-148-P3 Mdo-Mir-148-P3 Mml-Mir-148-P3 Mmu-Mir-148-P3 Oan-Mir-148-P3 Ocu-Mir-148-P3 Rno-Mir-148-P3 Sha-Mir-148-P3 Spt-Mir-148-P3 Sto-Mir-148-P3 Tni-Mir-148-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635976.1: 1771379-1771440 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGGUCUGGUCUGGUCUGGUCUGUUAAGCCCAAGUUCUGUGAUACACUUUGGCUCUGUUAUUGAGGAAAGUCAGUGCAUAACAGAACUUUGUCUUGGGAGAGCCAACUGCGAACUGAACCCC

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Structure

        10          20        30        40        50        60 
CUGGUCUGGUCUGGUCU-  -|  G     CCC         G  A    UU    CUGUUA 
                  GG UCU UUAAG   AAGUUCUGU AU CACU  GGCU      U
                  CC AGA GGUUC   UUCAAGACA UA GUGA  CUGA      U
CCCCAAGUCAAGCGUCAA  G^  G     UGU         A  C    --    AAGGAG 
120       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Bl	Br	Ey	Gi	Gl	He	In	Ki	Li	Mu	Ov	Pa	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-148-P3_5p*

mirBase accession

None

Sequence

0- CAAGUUCUGUGAUACACUUUGGCU -24

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Mature sequence

Cmi-Mir-148-P3_3p

mirBase accession

None

Sequence

40- UCAGUGCAUAACAGAACUUUGU -62

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