| MirGeneDB ID | Cmi-Mir-148-P2 |
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| Family name |
MIR-148 (all species) |
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| Species |
Australian ghostshark (Callorhinchus milii) |
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| MiRBase ID |
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| Paralogues |
Cmi-Mir-148-P1
Cmi-Mir-148-P3
Cmi-Mir-148-P4
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| Orthologues |
Dre-Mir-148-P2
Ebu-Mir-148
Gmo-Mir-148-P2
Loc-Mir-148-P2
Mal-Mir-148-P2
Pma-Mir-148-o2
Tni-Mir-148-P2
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635868.1: 5439530-5439588 [+]
UCSC
Ensembl
|
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| Seed |
CAGUGCA |
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Precursor
(pre-Mir +30nt flank) |
UAUUAAAAGUAAGGAAAGACUUUCAAAGGAAAGUUCUCUGAUACACUUGGACUUUCUAUUUAUUACAGUCAGUGCAUCACAGAACUUUGUUUUGGGAGUUUCUACUCGUGUUCUGAGCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UAUUAAAAGUAAGGAAA--| UU G C A UG UUCUAU
GACU CAAAG AAAGUUCU UGAU CACU GACU \
UUGA GUUUU UUUCAAGA ACUA GUGA CUGA U
ACGAGUCUUGUGCUCAUCU^ GG G C C -- CAUUAU
110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | The 3' end of the 3p arm is mono-adenylated. |
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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| Star sequence |
Cmi-Mir-148-P2_5p* |
| mirBase accession | None |
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| Sequence |
0- AAGUUCUCUGAUACACUUGGACU -23
Get sequence
|
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| Mature sequence |
Cmi-Mir-148-P2_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UCAGUGCAUCACAGAACUUUG -59
Get sequence
|
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