MirGeneDB 3.0

MirGeneDB ID

Dre-Mir-148-P2

Family name MIR-148 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-148
Paralogues Dre-Mir-148-P3 
Orthologues Cmi-Mir-148-P2  Ebu-Mir-148  Gmo-Mir-148-P2  Loc-Mir-148-P2  Mal-Mir-148-P2  Pma-Mir-148-o2  Tni-Mir-148-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr9: 1644693-1644750 [-] UCSC Ensembl
Seed CAGUGCA
Precursor
(pre-Mir +30nt flank)
UCAUCAAGCAGCUCUCUGGCUUUCCAAGUAAAGUUCUGUGAUACACUCCGACUCUGAAUGUUUGCAGUCAGUGCAUUACAGAACUUUGUUUUGGGAGUUUAAAGCUCAGGCCUGGAGG
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Structure
        10          20        30        40        50         
UCAUCAAGCAGCUCUCU--|   UU C                 A    CC    CUGAA 
                   GGCU  C AAGUAAAGUUCUGUGAU CACU  GACU     U
                   UUGA  G UUUGUUUCAAGACAUUA GUGA  CUGA     G
GGAGGUCCGGACUCGAAAU^   GG U                 C    --    CGUUU 
      110       100        90        80        70          60
Deep sequencing
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CommentAlthough this appears to be a Group 2 miRNA by far the highest read group is monoadenylated at the 3' end of the 3p arm.
3' NTU Yes
MotifsUG at 5p(-14)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-148-P2_5p*

mirBase accessionNone
Sequence
0- AAGUUCUGUGAUACACUCCGACU -23
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Mature sequence

Dre-Mir-148-P2_3p

mirBase accessionMIMAT0001845
Sequence
37- UCAGUGCAUUACAGAACUUUG -58
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Proposed targets TargetScanFish: dre-miR-148