MirGeneDB 2.1

MirGeneDB ID

Mal-Mir-148-P2

Family name MIR-148 (all species)
Seed CAGUGCA
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-148-P3 
Orthologues Cmi-Mir-148-P2  Dre-Mir-148-P2  Ebu-Mir-148  Gmo-Mir-148-P2  Loc-Mir-148-P2  Pma-Mir-148-o2  Tni-Mir-148-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)
KV884718.1: 1025614-1025671 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUAUGAGGUGGCACUGUGGCUUUCCAAAUAAAGUUCUGUGAUACACUUAGACUCUAAUUGCCUGCAGUCAGUGCAUUACAGAACUUUGUUUUGGGAGUUAAUACUUUAACCAGUGGGA
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Structure
        10          20        30        40        50         
CUAUGAGGUGGCACUGU--|   UU C                 A    UA    CUAAU 
                   GGCU  C AAAUAAAGUUCUGUGAU CACU  GACU     U
                   UUGA  G UUUGUUUCAAGACAUUA GUGA  CUGA     G
AGGGUGACCAAUUUCAUAA^   GG U                 C    --    CGUCC 
      110       100        90        80        70          60
Deep sequencing
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CommentThe highest read count is monoadenylated at the 3' end of the 3p arm.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-148-P2_5p*

mirBase accessionNone
Sequence
0- AAGUUCUGUGAUACACUUAGACU -23
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Mature sequence

Mal-Mir-148-P2_3p

mirBase accessionNone
Sequence
37- UCAGUGCAUUACAGAACUUUG -58
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