Mir-148-P4

MirGeneDB ID

Cmi-Mir-148-P4

Family name

MIR-148 (all species)

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-148-P1 Cmi-Mir-148-P2 Cmi-Mir-148-P3

Orthologues

Aca-Mir-148-P4 Ami-Mir-148-P4 Bta-Mir-148-P4 Cfa-Mir-148-P4 Cja-Mir-148-P4 Cli-Mir-148-P4 Cpi-Mir-148-P4 Cpo-Mir-148-P4 Dno-Mir-148-P4 Ebu-Mir-148 Eca-Mir-148-P4 Ete-Mir-148-P4 Gga-Mir-148-P4 Gja-Mir-148-P4 Hsa-Mir-148-P4 Laf-Mir-148-P4 Lch-Mir-148-P4 Loc-Mir-148-P4 Mml-Mir-148-P4 Mmr-Mir-148-P4 Mmu-Mir-148-P4 Mun-Mir-148-P4 Neu-Mir-148-P4 Ocu-Mir-148-P4 Pab-Mir-148-P4 Pbv-Mir-148-P4 Rno-Mir-148-P4 Sha-Mir-148-P4 Spt-Mir-148-P4 Tgu-Mir-148-P4 Xla-Mir-148-P4a Xla-Mir-148-P4b Xtr-Mir-148-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI638125.1: 5404-5461 [-] UCSC Ensembl

Seed

CAGUGCA

Precursor
(pre-Mir +30nt flank)

AAGGCUGAAGAGAGACUGGCUCCCAAGCUGAAGUUCUGUCAUACACUCAGGCUGUAGCUAAUGGAAGUCAGUGCAUCACAGAACUUUGACUCGAGAUUGCCAUCGCCACGUGACGUUG

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Structure

        10            20        30        40        50         
AAGGCUGAAGAGAGACUGG----|  CCA  CU          C  A    CA    GUAGC 
                       CUC   AG  GAAGUUCUGU AU CACU  GGCU     U
                       GAG   UC  UUUCAAGACA UA GUGA  CUGA     A
GUUGCAGUGCACCGCUACCGUUA^  C--  AG          C  C    --    AGGUA 
      110       100          90        80        70          60

Deep sequencing

Go to detailed chart

Comment

Given the position of the Drosha cut on the 5p arm it appears that the 3p arm is mono-adenylated.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-148-P4_5p*

mirBase accession

None

Sequence

0- AAGUUCUGUCAUACACUCAGGCU -23

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Mature sequence

Cmi-Mir-148-P4_3p

mirBase accession

None

Sequence

37- UCAGUGCAUCACAGAACUUUG -58

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