Mir-148-P4

MirGeneDB ID

Cmi-Mir-148-P4

Family name

MIR-148 (all species)

Seed

CAGUGCA

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-148-P1 Cmi-Mir-148-P2 Cmi-Mir-148-P3

Orthologues

Aca-Mir-148-P4 Ami-Mir-148-P4 Bta-Mir-148-P4 Cfa-Mir-148-P4 Cli-Mir-148-P4 Cpi-Mir-148-P4 Cpo-Mir-148-P4 Dno-Mir-148-P4 Ebu-Mir-148 Ete-Mir-148-P4 Gga-Mir-148-P4 Gja-Mir-148-P4 Hsa-Mir-148-P4 Lch-Mir-148-P4 Loc-Mir-148-P4 Mml-Mir-148-P4 Mmu-Mir-148-P4 Mun-Mir-148-P4 Ocu-Mir-148-P4 Pbv-Mir-148-P4 Rno-Mir-148-P4 Sha-Mir-148-P4 Spt-Mir-148-P4 Tgu-Mir-148-P4 Xla-Mir-148-P4a Xla-Mir-148-P4b Xtr-Mir-148-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI638125.1: 5404-5461 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAGGCUGAAGAGAGACUGGCUCCCAAGCUGAAGUUCUGUCAUACACUCAGGCUGUAGCUAAUGGAAGUCAGUGCAUCACAGAACUUUGACUCGAGAUUGCCAUCGCCACGUGACGUUG

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Structure

        10            20        30        40        50         
AAGGCUGAAGAGAGACUGG----|  CCA  CU          C  A    CA    GUAGC 
                       CUC   AG  GAAGUUCUGU AU CACU  GGCU     U
                       GAG   UC  UUUCAAGACA UA GUGA  CUGA     A
GUUGCAGUGCACCGCUACCGUUA^  C--  AG          C  C    --    AGGUA 
      110       100          90        80        70          60

Deep sequencing

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Comment

Given the position of the Drosha cut on the 5p arm it appears that the 3p arm is mono-adenylated.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	Gl	He	In	Ki	Li	Mu	Ov	Pa	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-148-P4_5p*

mirBase accession

None

Sequence

0- AAGUUCUGUCAUACACUCAGGCU -23

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Mature sequence

Cmi-Mir-148-P4_3p

mirBase accession

None

Sequence

37- UCAGUGCAUCACAGAACUUUG -58

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