Mir-148-P4

MirGeneDB ID

Gja-Mir-148-P4

Family name

MIR-148 (all species)

Seed

CAGUGCA

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-148-P1

Orthologues

Aca-Mir-148-P4 Ami-Mir-148-P4 Bta-Mir-148-P4 Cfa-Mir-148-P4 Cli-Mir-148-P4 Cmi-Mir-148-P4 Cpi-Mir-148-P4 Cpo-Mir-148-P4 Dno-Mir-148-P4 Ebu-Mir-148 Ete-Mir-148-P4 Gga-Mir-148-P4 Hsa-Mir-148-P4 Lch-Mir-148-P4 Loc-Mir-148-P4 Mml-Mir-148-P4 Mmu-Mir-148-P4 Mun-Mir-148-P4 Ocu-Mir-148-P4 Pbv-Mir-148-P4 Rno-Mir-148-P4 Sha-Mir-148-P4 Spt-Mir-148-P4 Tgu-Mir-148-P4 Xla-Mir-148-P4a Xla-Mir-148-P4b Xtr-Mir-148-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015161593.1: 32569-32629 [+]

Precursor
(pre-Mir +30nt flank)

UGGGGAAGGGGCUGUUGCAGCGCUUGAGGUGAAGUUCUGUUAUACACUCUGACUGUGGCUACGUGGAAGUCAGUGCAUCACAGAACUUUGUCUCGAGAGCUUUCCAGCAUCCAGCAGCGGG

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Structure

        10          20        30        40        50        60 
UGGGGAAGGGGCUGUUGC--|  G       UG         U  A    CU    GUGGCU 
                    AGC CUUGAGG  AAGUUCUGU AU CACU  GACU      \
                    UCG GAGCUCU  UUCAAGACA UA GUGA  CUGA      A
GGGCGACGACCUACGACCUU^  A       GU         C  C    --    AGGUGC 
 .       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Star sequence

Gja-Mir-148-P4_5p*

mirBase accession

None

Sequence

0- GAAGUUCUGUUAUACACUCUGACU -24

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Mature sequence

Gja-Mir-148-P4_3p

mirBase accession

None

Sequence

39- UCAGUGCAUCACAGAACUUUGU -61

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