MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-148-P4

Family name MIR-148 (all species)
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-148-P1 
Orthologues Aca-Mir-148-P4  Ami-Mir-148-P4  Bta-Mir-148-P4  Cfa-Mir-148-P4  Cja-Mir-148-P4  Cli-Mir-148-P4  Cmi-Mir-148-P4  Cpi-Mir-148-P4  Cpo-Mir-148-P4  Dno-Mir-148-P4  Ebu-Mir-148  Eca-Mir-148-P4  Ete-Mir-148-P4  Gga-Mir-148-P4  Hsa-Mir-148-P4  Laf-Mir-148-P4  Lch-Mir-148-P4  Loc-Mir-148-P4  Mml-Mir-148-P4  Mmr-Mir-148-P4  Mmu-Mir-148-P4  Mun-Mir-148-P4  Neu-Mir-148-P4  Ocu-Mir-148-P4  Pab-Mir-148-P4  Pbv-Mir-148-P4  Rno-Mir-148-P4  Sha-Mir-148-P4  Spt-Mir-148-P4  Tgu-Mir-148-P4  Xla-Mir-148-P4a  Xla-Mir-148-P4b  Xtr-Mir-148-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015161593.1: 32569-32629 [+]
Seed CAGUGCA
Precursor
(pre-Mir +30nt flank)		 
UGGGGAAGGGGCUGUUGCAGCGCUUGAGGUGAAGUUCUGUUAUACACUCUGACUGUGGCUACGUGGAAGUCAGUGCAUCACAGAACUUUGUCUCGAGAGCUUUCCAGCAUCCAGCAGCGGG
Get precursor sequence
Structure
        10          20        30        40        50        60 
UGGGGAAGGGGCUGUUGC--|  G       UG         U  A    CU    GUGGCU 
                    AGC CUUGAGG  AAGUUCUGU AU CACU  GACU      \
                    UCG GAGCUCU  UUCAAGACA UA GUGA  CUGA      A
GGGCGACGACCUACGACCUU^  A       GU         C  C    --    AGGUGC 
 .       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Star sequence

Gja-Mir-148-P4_5p*
mirBase accessionNone
Sequence 
0- GAAGUUCUGUUAUACACUCUGACU -24
Get sequence
Mature sequence

Gja-Mir-148-P4_3p
mirBase accessionNone
Sequence 
39- UCAGUGCAUCACAGAACUUUGU -61
Get sequence