Mir-148-P3

MirGeneDB ID

Ami-Mir-148-P3

Family name

MIR-148 (all species)

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-152

Paralogues

Ami-Mir-148-P4

Orthologues

Bta-Mir-148-P3 Cfa-Mir-148-P3 Cja-Mir-148-P3 Cmi-Mir-148-P3 Cpi-Mir-148-P3 Cpo-Mir-148-P3 Dno-Mir-148-P3 Dre-Mir-148-P3 Ebu-Mir-148 Eca-Mir-148-P3 Gmo-Mir-148-P3 Hsa-Mir-148-P3 Laf-Mir-148-P3 Loc-Mir-148-P3 Mal-Mir-148-P3 Mdo-Mir-148-P3 Mml-Mir-148-P3 Mmr-Mir-148-P3 Mmu-Mir-148-P3 Neu-Mir-148-P3 Oan-Mir-148-P3 Ocu-Mir-148-P3 Pab-Mir-148-P3 Rno-Mir-148-P3 Sha-Mir-148-P3 Spt-Mir-148-P3 Sto-Mir-148-P3 Tni-Mir-148-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017708231.1: 2942476-2942534 [-] UCSC

Seed

CAGUGCA

Precursor
(pre-Mir +30nt flank)

GGACCCAGCCCCUCACAGUCCUCUCAGCUCAGGUUCUGUGGUACACUUGGACUCGGACUCUGGAGCAGUCAGUGCAUGACAGAACUUGGGUUUGGAUGGACCCACACACGGAGCUGAGC

Get precursor sequence

Structure

        10         20         30        40        50          
GGACCCAGCCCCUCACA-    -|  C              G  A    UG    CGGACU 
                  GUCC UCU AGCUCAGGUUCUGU GU CACU  GACU      \
                  CAGG AGG UUGGGUUCAAGACA UA GUGA  CUGA      C
CGAGUCGAGGCACACACC    U^  U              G  C    --    CGAGGU 
       110       100        90        80          70