MirGeneDB 2.1

MirGeneDB ID

Cli-Mir-181-P2a

Family name MIR-181 (all species)
Seed ACAUUCA
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-181b-1
Paralogues Cli-Mir-181-P1a  Cli-Mir-181-P1b  Cli-Mir-181-P2b 
Orthologues Aca-Mir-181-P2a  Ami-Mir-181-P2a  Bta-Mir-181-P2a  Cfa-Mir-181-P2a  Cmi-Mir-181-P2a  Cpi-Mir-181-P2a  Cpo-Mir-181-P2a  Dno-Mir-181-P2a  Dre-Mir-181-P2a1  Dre-Mir-181-P2a2  Ete-Mir-181-P2a  Gga-Mir-181-P2a  Gja-Mir-181-P2a  Gmo-Mir-181-P2a1  Hsa-Mir-181-P2a  Lch-Mir-181-P2a  Loc-Mir-181-P2a  Mal-Mir-181-P2a1  Mdo-Mir-181-P2a  Mml-Mir-181-P2a  Mmu-Mir-181-P2a  Mun-Mir-181-P2a  Oan-Mir-181-P2a  Ocu-Mir-181-P2a  Pbv-Mir-181-P2a  Rno-Mir-181-P2a  Sha-Mir-181-P2a  Spt-Mir-181-P2a  Sto-Mir-181-P2a  Tgu-Mir-181-P2a  Tni-Mir-181-P2a1  Xla-Mir-181-P2a3  Xla-Mir-181-P2a4  Xtr-Mir-181-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)
scaffold7: 7344940-7344999 [+]
Clustered miRNAs
(< 50kb from Mir-181-P2a)
Mir-181-P1a scaffold7: 7344755-7344816 [+]
Mir-181-P2a scaffold7: 7344940-7344999 [+]
Precursor
(pre-Mir +30nt flank)
UGCAAAGCUUUACAAAAAAAGGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUUAACUAUGUGGACAAGCUCACUGAACAAUGAAUGCAACUGUGGCCCCACAUUUUACAGUUGCCAUC
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Structure
        10        20         30        40        50        60 
UGCAAAGCUUUACAAAAAAA-|      AUCAA         CUG          UAACUA 
                     GGUCACA     CAUUCAUUG   UCGGUGGGUU      U
                     CCGGUGU     GUAAGUAAC   AGUCACUCGA      G
CUACCGUUGACAUUUUACACC^      CAAC-         A--          ACAGGU 
.       110       100        90         80          70
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU Yes
MotifsNo
Tissue expression
 +
Cl Cl Cl Cl Cl To
Mature sequence

Cli-Mir-181-P2a_5p

mirBase accessionMIMAT0038553
Sequence
0- AACAUUCAUUGCUGUCGGUGGGUU -24
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Star sequence

Cli-Mir-181-P2a_3p*

mirBase accessionMIMAT0038554
Sequence
40- CUCACUGAACAAUGAAUGCA -60
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