MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-181-P2a1

Family name MIR-181 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-181b-3
Paralogues Dre-Mir-181-P1a1  Dre-Mir-181-P1a2  Dre-Mir-181-P1b2  Dre-Mir-181-P1c1  Dre-Mir-181-P1c2  Dre-Mir-181-P2a2  Dre-Mir-181-P2b2  Dre-Mir-181-P2c1  Dre-Mir-181-P2c2 
Orthologues Aca-Mir-181-P2a  Ami-Mir-181-P2a  Bta-Mir-181-P2a  Cfa-Mir-181-P2a  Cja-Mir-181-P2a  Cli-Mir-181-P2a  Cmi-Mir-181-P2a  Cpi-Mir-181-P2a  Cpo-Mir-181-P2a  Dno-Mir-181-P2a  Eca-Mir-181-P2a  Ete-Mir-181-P2a  Gga-Mir-181-P2a  Gja-Mir-181-P2a  Gmo-Mir-181-P2a1  Hsa-Mir-181-P2a  Laf-Mir-181-P2a  Lch-Mir-181-P2a  Loc-Mir-181-P2a  Mal-Mir-181-P2a1  Mdo-Mir-181-P2a  Mml-Mir-181-P2a  Mmr-Mir-181-P2a  Mmu-Mir-181-P2a  Mun-Mir-181-P2a  Neu-Mir-181-P2a  Oan-Mir-181-P2a  Ocu-Mir-181-P2a  Pab-Mir-181-P2a  Pbv-Mir-181-P2a  Rno-Mir-181-P2a  Sha-Mir-181-P2a  Spt-Mir-181-P2a  Sto-Mir-181-P2a  Tgu-Mir-181-P2a  Tni-Mir-181-P2a1  Xtr-Mir-181-P2a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr22: 22825805-22825864 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P2a1)		 Mir-181-P2a1 chr22: 22825805-22825864 [-] UCSC Ensembl
Mir-181-P1a1 chr22: 22826011-22826074 [-] UCSC Ensembl
Seed ACAUUCA
Precursor
(pre-Mir +30nt flank)		 
ACUUUGAAAACUACAACAAAGGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUGGAUUGUAAAAGAAAGCUCACUGAACAAUGAAUGCAACUGUGUCCCAGAUUUACAUCUCGCAAAGU
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Structure
        10        20         30        40        50        60 
ACUUUGAAAACUACAACAAA-| U    AUCAA         CUG          GGAUUG 
                     GG CACA     CAUUCAUUG   UCGGUGGGUU      U
                     CC GUGU     GUAAGUAAC   AGUCACUCGA      A
UGAAACGCUCUACAUUUAGAC^ U    CAAC-         A--          AAGAAA 
.       110       100        90         80          70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-181-P2a1_5p
mirBase accessionMIMAT0001270
Sequence 
0- AACAUUCAUUGCUGUCGGUGGGUU -24
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Star sequence

Dre-Mir-181-P2a1_3p*
mirBase accessionMIMAT0048656
Sequence 
40- CUCACUGAACAAUGAAUGCA -60
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