MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-181-P2a2

Family name MIR-181 (all species)
Seed ACAUUCA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-181d
Paralogues Dre-Mir-181-P1a1  Dre-Mir-181-P1a2  Dre-Mir-181-P1b2  Dre-Mir-181-P1c1  Dre-Mir-181-P1c2  Dre-Mir-181-P2a1  Dre-Mir-181-P2b2  Dre-Mir-181-P2c1  Dre-Mir-181-P2c2 
Orthologues Aca-Mir-181-P2a  Ami-Mir-181-P2a  Bta-Mir-181-P2a  Cfa-Mir-181-P2a  Cli-Mir-181-P2a  Cmi-Mir-181-P2a  Cpi-Mir-181-P2a  Cpo-Mir-181-P2a  Dno-Mir-181-P2a  Ete-Mir-181-P2a  Gga-Mir-181-P2a  Gja-Mir-181-P2a  Hsa-Mir-181-P2a  Lch-Mir-181-P2a  Loc-Mir-181-P2a  Mdo-Mir-181-P2a  Mml-Mir-181-P2a  Mmu-Mir-181-P2a  Mun-Mir-181-P2a  Oan-Mir-181-P2a  Ocu-Mir-181-P2a  Pbv-Mir-181-P2a  Rno-Mir-181-P2a  Sha-Mir-181-P2a  Spt-Mir-181-P2a  Sto-Mir-181-P2a  Tgu-Mir-181-P2a  Xtr-Mir-181-P2a 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr21: 8221672-8221730 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P2a2)
Mir-181-P2a2 chr21: 8221672-8221730 [-] UCSC Ensembl
Mir-181-P1a2 chr21: 8221816-8221875 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUCCUGCUUUUUUUUUACGGCUGCAAUAUACAUUCAUUGAUGUCGUUGGGUUUCACAUGUGAGCGACUCACUGACCAAUGAGUGCAAACUGCAGUAGGAACAAUGAAACGGCAUCUG
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Structure
        10        20         30        40        50        60
UUUUCCUGCUUUUUUUUUACG-|     AUAUA         AU    U     UUCACA 
                      GCUGCA     CAUUCAUUG  GUCG UGGGU      U
                      UGACGU     GUGAGUAAC  CAGU ACUCA      G
GUCUACGGCAAAGUAACAAGGA^     CAAAC         --    C     GCGAGU 
       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-181-P2a2_5p

mirBase accessionMIMAT0048657
Sequence
0- UACAUUCAUUGAUGUCGUUGGGU -23
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Star sequence

Dre-Mir-181-P2a2_3p*

mirBase accessionMIMAT0048658
Sequence
39- UCACUGACCAAUGAGUGCAA -59
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