Mir-181-P2a2

MirGeneDB ID

Dre-Mir-181-P2a2

Family name

MIR-181 (all species)

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-181d

Paralogues

Dre-Mir-181-P1a1 Dre-Mir-181-P1a2 Dre-Mir-181-P1b2 Dre-Mir-181-P1c1 Dre-Mir-181-P1c2 Dre-Mir-181-P2a1 Dre-Mir-181-P2b2 Dre-Mir-181-P2c1 Dre-Mir-181-P2c2

Orthologues

Aca-Mir-181-P2a Ami-Mir-181-P2a Bta-Mir-181-P2a Cfa-Mir-181-P2a Cja-Mir-181-P2a Cli-Mir-181-P2a Cmi-Mir-181-P2a Cpi-Mir-181-P2a Cpo-Mir-181-P2a Dno-Mir-181-P2a Eca-Mir-181-P2a Ete-Mir-181-P2a Gga-Mir-181-P2a Gja-Mir-181-P2a Hsa-Mir-181-P2a Laf-Mir-181-P2a Lch-Mir-181-P2a Loc-Mir-181-P2a Mdo-Mir-181-P2a Mml-Mir-181-P2a Mmr-Mir-181-P2a Mmu-Mir-181-P2a Mun-Mir-181-P2a Neu-Mir-181-P2a Oan-Mir-181-P2a Ocu-Mir-181-P2a Pab-Mir-181-P2a Pbv-Mir-181-P2a Rno-Mir-181-P2a Sha-Mir-181-P2a Spt-Mir-181-P2a Sto-Mir-181-P2a Tgu-Mir-181-P2a Xtr-Mir-181-P2a

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(danRer11)

chr21: 8221672-8221730 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P2a2)

Mir-181-P2a2 chr21: 8221672-8221730 [-] UCSC Ensembl
Mir-181-P1a2 chr21: 8221816-8221875 [-] UCSC Ensembl

Seed

ACAUUCA

Precursor
(pre-Mir +30nt flank)

UUUUCCUGCUUUUUUUUUACGGCUGCAAUAUACAUUCAUUGAUGUCGUUGGGUUUCACAUGUGAGCGACUCACUGACCAAUGAGUGCAAACUGCAGUAGGAACAAUGAAACGGCAUCUG

Get precursor sequence

Structure

        10        20         30        40        50        60
UUUUCCUGCUUUUUUUUUACG-|     AUAUA         AU    U     UUCACA 
                      GCUGCA     CAUUCAUUG  GUCG UGGGU      U
                      UGACGU     GUGAGUAAC  CAGU ACUCA      G
GUCUACGGCAAAGUAACAAGGA^     CAAAC         --    C     GCGAGU 
       110       100        90        80          70